FastQCFastQC Report
Mon 6 Jun 2016
ERR1378247.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378247.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1396392
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTTGCGT300.00514843529.99904334
TGGCGGA450.001226914324.99920536
GATCGCA807.555928E-519.69044
ATCGCAC706.980946E-419.287175
ATTACGT600.00651237918.74940112
ACCCGGC1209.75719E-514.99952114
CTTCGTT1705.8733167E-714.5625312
AGATCGC1402.2267932E-514.4669333
CGTTGGA2355.857146E-1014.3627895
TCGTTGG2408.021743E-1014.0645694
CCTTCGT1951.819335E-713.8526581
AAGATCG1301.9224366E-413.8496812
ATCGCTT2451.0968506E-913.77507114
TTCGTTG2907.2759576E-1113.1920713
CGGAGGT1902.0629504E-613.02590133
ACTAGAC4700.012.9251219
CGGGATT1751.268352E-512.85673314
TCGCTTG2155.999991E-712.5577415
GCCACCG3103.6039637E-810.8879196
GAATCGC1903.8691657E-410.65755612
Produced by FastQC (version 0.11.5)