FastQCFastQC Report
Mon 6 Jun 2016
ERR1378246.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378246.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences987283
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGCGACG550.0039291520.4608334
TTCGGGA550.00393722820.4535798
CGTGAGC1553.5968187E-614.5235351
GCCACCG1656.895947E-613.6384826
CTTCGTA1000.007552387713.4993627
GAACCCG1504.271207E-513.49936221
AACCCGG1200.001656709113.12437922
CAGAGCG1200.001656709113.12437934
CGTTGGA1902.0568787E-613.0283385
CCTTCGT1403.590157E-412.8637011
TCGTTGG1952.7477854E-612.6962084
ACGGGAT1852.24328E-512.16158713
CGGGATT2054.826401E-612.07259914
GGCGCGG1350.003997209511.6702534
ACCCGGG1558.493846E-411.61235423
TTCGTTG2201.0552927E-511.2534583
ACTAGAC3401.029548E-911.24946819
TGAGCCG1650.001432937110.90857645
CTCGGGA1903.8675545E-410.65739135
CCGTCTC2605.857135E-610.3899121