Basic Statistics
Measure | Value |
---|---|
Filename | ERR1378246.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 987283 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGCGACG | 55 | 0.00392915 | 20.460833 | 4 |
TTCGGGA | 55 | 0.003937228 | 20.453579 | 8 |
CGTGAGC | 155 | 3.5968187E-6 | 14.523535 | 1 |
GCCACCG | 165 | 6.895947E-6 | 13.638482 | 6 |
CTTCGTA | 100 | 0.0075523877 | 13.499362 | 7 |
GAACCCG | 150 | 4.271207E-5 | 13.499362 | 21 |
AACCCGG | 120 | 0.0016567091 | 13.124379 | 22 |
CAGAGCG | 120 | 0.0016567091 | 13.124379 | 34 |
CGTTGGA | 190 | 2.0568787E-6 | 13.028338 | 5 |
CCTTCGT | 140 | 3.590157E-4 | 12.863701 | 1 |
TCGTTGG | 195 | 2.7477854E-6 | 12.696208 | 4 |
ACGGGAT | 185 | 2.24328E-5 | 12.161587 | 13 |
CGGGATT | 205 | 4.826401E-6 | 12.072599 | 14 |
GGCGCGG | 135 | 0.0039972095 | 11.670253 | 4 |
ACCCGGG | 155 | 8.493846E-4 | 11.612354 | 23 |
TTCGTTG | 220 | 1.0552927E-5 | 11.253458 | 3 |
ACTAGAC | 340 | 1.029548E-9 | 11.249468 | 19 |
TGAGCCG | 165 | 0.0014329371 | 10.908576 | 45 |
CTCGGGA | 190 | 3.8675545E-4 | 10.657391 | 35 |
CCGTCTC | 260 | 5.857135E-6 | 10.389912 | 1 |