FastQCFastQC Report
Mon 6 Jun 2016
ERR1378245.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378245.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1516413
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCGTACA300.005142055530.0068171
GTGCGAT908.259072E-619.99860814
CGCGCCC851.20540615E-418.52812211
TCACGAA800.001711227116.87493934
CCACCGC1904.4929038E-1016.5788887
AATTTCG850.002565734315.88229537
GTGCGCC900.003748987615.0034082
CGCCACC3100.014.5175115
GGTGCGA950.00537954314.209537513
CCTTCGT1951.825083E-713.8492991
GCCACCG2601.8007995E-1013.8474736
CACCGCG1301.9273657E-413.8456468
ACCGCGC1301.927905E-413.8451919
CGCCCGG2451.0968506E-913.77455113
GCGCCCG1851.529761E-613.37744712
ACGCCCG1250.002253270212.59912212
TGCGCCA1454.8421777E-412.4162043
GCCCGGC3753.6379788E-1211.99916614
AAAGCGC1953.841639E-511.539565
CGTGAGC2951.731496E-811.4432771