Basic Statistics
Measure | Value |
---|---|
Filename | ERR1378244.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1480654 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TGCCGTC | 185 | 0.0 | 34.056763 | 45 |
TATGCCG | 190 | 0.0 | 33.160534 | 43 |
ATGCCGT | 195 | 0.0 | 32.310265 | 44 |
AGATCGG | 115 | 9.094947E-12 | 25.433369 | 25 |
ATGCCGA | 395 | 0.0 | 23.922722 | 19 |
ATCGGAA | 135 | 3.6379788E-12 | 23.332039 | 27 |
AATGCCG | 405 | 0.0 | 23.332037 | 18 |
GATCGGA | 140 | 5.456968E-12 | 22.498749 | 26 |
GACCGAT | 280 | 0.0 | 21.695223 | 26 |
CGATTAG | 295 | 0.0 | 21.354746 | 29 |
GCGGTTC | 450 | 0.0 | 21.003088 | 5 |
TGCCGAG | 455 | 0.0 | 20.76808 | 20 |
GAGACCG | 295 | 0.0 | 20.592077 | 24 |
GAGCGGT | 460 | 0.0 | 20.547888 | 3 |
AGACCGA | 300 | 0.0 | 20.248877 | 25 |
CCGATTA | 305 | 0.0 | 19.916925 | 28 |
AGAGCGG | 485 | 0.0 | 19.48872 | 2 |
AGCGGTT | 485 | 0.0 | 19.487404 | 4 |
ACCGATT | 315 | 0.0 | 19.284643 | 27 |
CGGTTCA | 500 | 0.0 | 18.902779 | 6 |