FastQCFastQC Report
Mon 6 Jun 2016
ERR1378244.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378244.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1480654
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TGCCGTC1850.034.05676345
TATGCCG1900.033.16053443
ATGCCGT1950.032.31026544
AGATCGG1159.094947E-1225.43336925
ATGCCGA3950.023.92272219
ATCGGAA1353.6379788E-1223.33203927
AATGCCG4050.023.33203718
GATCGGA1405.456968E-1222.49874926
GACCGAT2800.021.69522326
CGATTAG2950.021.35474629
GCGGTTC4500.021.0030885
TGCCGAG4550.020.7680820
GAGACCG2950.020.59207724
GAGCGGT4600.020.5478883
AGACCGA3000.020.24887725
CCGATTA3050.019.91692528
AGAGCGG4850.019.488722
AGCGGTT4850.019.4874044
ACCGATT3150.019.28464327
CGGTTCA5000.018.9027796