Basic Statistics
Measure | Value |
---|---|
Filename | ERR1378243.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 740681 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 3844 | 0.5189818558866773 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTTAAGAATCTCGTATGCC | 2697 | 0.3641243666301687 | Illumina Paired End PCR Primer 2 (97% over 35bp) |
AAGAGCGGTTCAGCAGGAATGCCGAGACCGTTAAGAATCTCGTATGCCGTC | 2565 | 0.34630292933125056 | Illumina Paired End PCR Primer 2 (96% over 32bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATGCCG | 290 | 0.0 | 39.569145 | 43 |
ATGCCGT | 305 | 0.0 | 38.36083 | 44 |
AGATCGG | 565 | 0.0 | 36.63486 | 25 |
TGCCGTC | 320 | 0.0 | 36.562664 | 45 |
GATCGGA | 560 | 0.0 | 36.560196 | 26 |
GGTACGA | 25 | 0.002107277 | 35.997734 | 33 |
ATCGGAA | 570 | 0.0 | 35.91879 | 27 |
CGAGATC | 620 | 0.0 | 33.747875 | 23 |
CCGAGAT | 635 | 0.0 | 32.95068 | 22 |
TCGGAAG | 635 | 0.0 | 32.59637 | 28 |
GAGATCG | 685 | 0.0 | 30.545519 | 24 |
TTTCGCA | 30 | 0.005145978 | 30.000132 | 39 |
AATGCCG | 1135 | 0.0 | 28.544455 | 18 |
TGCCGAG | 1135 | 0.0 | 28.544455 | 20 |
ATGCCGA | 1140 | 0.0 | 28.419262 | 19 |
GCCGAGA | 1195 | 0.0 | 26.546444 | 21 |
GAATGCC | 1315 | 0.0 | 24.808323 | 17 |
CGGAAGA | 840 | 0.0 | 24.105623 | 29 |
GGAATGC | 1460 | 0.0 | 22.498583 | 16 |
CCGTTAA | 540 | 0.0 | 21.6653 | 28 |