FastQCFastQC Report
Mon 6 Jun 2016
ERR1378243.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378243.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences740681
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT38440.5189818558866773Illumina Paired End PCR Primer 2 (96% over 30bp)
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTTAAGAATCTCGTATGCC26970.3641243666301687Illumina Paired End PCR Primer 2 (97% over 35bp)
AAGAGCGGTTCAGCAGGAATGCCGAGACCGTTAAGAATCTCGTATGCCGTC25650.34630292933125056Illumina Paired End PCR Primer 2 (96% over 32bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG2900.039.56914543
ATGCCGT3050.038.3608344
AGATCGG5650.036.6348625
TGCCGTC3200.036.56266445
GATCGGA5600.036.56019626
GGTACGA250.00210727735.99773433
ATCGGAA5700.035.9187927
CGAGATC6200.033.74787523
CCGAGAT6350.032.9506822
TCGGAAG6350.032.5963728
GAGATCG6850.030.54551924
TTTCGCA300.00514597830.00013239
AATGCCG11350.028.54445518
TGCCGAG11350.028.54445520
ATGCCGA11400.028.41926219
GCCGAGA11950.026.54644421
GAATGCC13150.024.80832317
CGGAAGA8400.024.10562329
GGAATGC14600.022.49858316
CCGTTAA5400.021.665328