FastQCFastQC Report
Mon 6 Jun 2016
ERR1378242.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378242.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1022141
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT45390.4440678927858289Illumina Paired End PCR Primer 2 (96% over 30bp)
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAATACAATCTCGTATGCC40840.3995534862607018Illumina Paired End PCR Primer 2 (97% over 34bp)
AAGAGCGGTTCAGCAGGAATGCCGAGACCGAATACAATCTCGTATGCCGTC31930.31238351655984836Illumina Paired End PCR Primer 2 (96% over 31bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATGCCGT4800.037.49759744
TATGCCG4700.037.3380343
TGCCGTC4900.036.73233845
GATCGGA7300.035.75113326
AGATCGG7500.035.09774825
ATCGGAA7500.034.79776827
CGAGATC8300.031.44376623
TCGGAAG8500.030.96860128
CCGAGAT8600.030.34689122
GAGATCG8600.030.0852824
AATGCCG17650.025.11170418
TGCCGAG17900.024.76098320
ATGCCGA18050.024.55521219
GCCGAGA18750.023.63848321
GAATGCC19400.022.84647417
GGAATGC21200.021.01280216
CGAATAC9550.020.2604832
CTCGTAT9750.020.07563642
GACCGAA9600.019.92059929
GTATGCC9750.019.84488345