Basic Statistics
Measure | Value |
---|---|
Filename | ERR1378239.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1010408 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 5087 | 0.5034599884403133 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
AAGAGCGGTTCAGCAGGAATGCCGAGACCGATACAAATCTCGTATGCCGTC | 3574 | 0.35371849787412607 | Illumina Paired End PCR Primer 2 (96% over 32bp) |
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATACAAATCTCGTATGCC | 3563 | 0.3526298287424486 | Illumina Paired End PCR Primer 2 (97% over 35bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATGCCG | 350 | 0.0 | 35.35695 | 43 |
ATGCCGT | 395 | 0.0 | 31.89856 | 44 |
ATCGGAA | 700 | 0.0 | 31.819677 | 27 |
GATCGGA | 710 | 0.0 | 31.371515 | 26 |
AGATCGG | 720 | 0.0 | 31.248283 | 25 |
TCGGAAG | 770 | 0.0 | 30.38794 | 28 |
GTATGCG | 30 | 0.005148352 | 29.998348 | 11 |
ACGACTC | 30 | 0.005148352 | 29.998348 | 10 |
TGCCGTC | 435 | 0.0 | 28.965357 | 45 |
CCGAGAT | 780 | 0.0 | 28.556124 | 22 |
CGAGATC | 785 | 0.0 | 28.374237 | 23 |
GAGATCG | 875 | 0.0 | 25.712872 | 24 |
CCGATAC | 770 | 0.0 | 24.544104 | 31 |
ACCGATA | 780 | 0.0 | 24.229437 | 30 |
CGATACA | 780 | 0.0 | 24.229437 | 32 |
GACCGAT | 805 | 0.0 | 23.476969 | 29 |
AATGCCG | 1560 | 0.0 | 23.364101 | 18 |
CGTATGC | 815 | 0.0 | 23.190058 | 44 |
ATGCCGA | 1590 | 0.0 | 23.064768 | 19 |
TGCCGAG | 1575 | 0.0 | 22.998735 | 20 |