FastQCFastQC Report
Mon 6 Jun 2016
ERR1378237.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378237.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1011653
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT52070.5147021755483353Illumina Paired End PCR Primer 2 (96% over 30bp)
AAGAGCGGTTCAGCAGGAATGCCGAGACCGAGTAATATCTCGTATGCCGTC29930.29585243161439745Illumina Paired End PCR Primer 2 (96% over 31bp)
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAGTAATATCTCGTATGCC28870.28537453059497675Illumina Paired End PCR Primer 2 (97% over 34bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATGCCGT3950.035.88540644
AGATCGG7050.034.78486325
ATCGGAA7100.034.539927
GATCGGA7200.034.3726626
TATGCCG4000.034.3118643
TGCCGTC4200.034.28507645
TCGGAAG7350.033.9772828
CGAGATC8700.028.44633923
AATGCCG13850.028.42766618
CCGAGAT8850.027.96419522
ATGCCGA14050.027.8628719
GAGATCG8850.027.70997624
TGCCGAG14500.026.99816120
GAATGCC15550.025.46450217
GCCGAGA15150.025.24580421
CGGAAGA10050.024.84905429
GGAATGC16900.023.82973916
CGAGTAA5900.023.26112729
CTCGTAT6050.022.68552439
CGTATGC6100.022.4995841