Basic Statistics
Measure | Value |
---|---|
Filename | ERR1378237.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1011653 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 5207 | 0.5147021755483353 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
AAGAGCGGTTCAGCAGGAATGCCGAGACCGAGTAATATCTCGTATGCCGTC | 2993 | 0.29585243161439745 | Illumina Paired End PCR Primer 2 (96% over 31bp) |
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAGTAATATCTCGTATGCC | 2887 | 0.28537453059497675 | Illumina Paired End PCR Primer 2 (97% over 34bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
ATGCCGT | 395 | 0.0 | 35.885406 | 44 |
AGATCGG | 705 | 0.0 | 34.784863 | 25 |
ATCGGAA | 710 | 0.0 | 34.5399 | 27 |
GATCGGA | 720 | 0.0 | 34.37266 | 26 |
TATGCCG | 400 | 0.0 | 34.31186 | 43 |
TGCCGTC | 420 | 0.0 | 34.285076 | 45 |
TCGGAAG | 735 | 0.0 | 33.97728 | 28 |
CGAGATC | 870 | 0.0 | 28.446339 | 23 |
AATGCCG | 1385 | 0.0 | 28.427666 | 18 |
CCGAGAT | 885 | 0.0 | 27.964195 | 22 |
ATGCCGA | 1405 | 0.0 | 27.86287 | 19 |
GAGATCG | 885 | 0.0 | 27.709976 | 24 |
TGCCGAG | 1450 | 0.0 | 26.998161 | 20 |
GAATGCC | 1555 | 0.0 | 25.464502 | 17 |
GCCGAGA | 1515 | 0.0 | 25.245804 | 21 |
CGGAAGA | 1005 | 0.0 | 24.849054 | 29 |
GGAATGC | 1690 | 0.0 | 23.829739 | 16 |
CGAGTAA | 590 | 0.0 | 23.261127 | 29 |
CTCGTAT | 605 | 0.0 | 22.685524 | 39 |
CGTATGC | 610 | 0.0 | 22.49958 | 41 |