FastQCFastQC Report
Mon 6 Jun 2016
ERR1378233.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378233.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences900532
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT53220.590983996126734Illumina Paired End PCR Primer 2 (96% over 30bp)
AAGAGCGGTTCAGCAGGAATGCCGAGACCGAGCGTAATCTCGTATGCCGTC32460.36045359853952996Illumina Paired End PCR Primer 2 (96% over 33bp)
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAGCGTAATCTCGTATGCC29460.3271399572697028Illumina Paired End PCR Primer 2 (97% over 36bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATGCCGT4000.038.8141844
TATGCCG4100.038.41629443
TGCCGTC4200.037.5016245
TCGGAAG8100.033.8865928
GGTCGGA401.5609181E-533.7477126
GTCGGAA401.5609181E-533.7477127
ATCGGAA7800.033.4592727
AGATCGG7900.033.32052225
GATCGGA8050.032.9791326
CCGAGAT8900.030.0822322
CGAGATC9350.028.6344223
GAGATCG9300.028.54644824
AATGCCG16300.026.77732518
TGCCGAG16350.026.5578320
ATGCCGA16800.025.98038119
GAATGCC17600.025.18295117
GCCGAGA17450.023.98118221
GGAATGC18650.023.52387216
CGGAAGA11750.023.36011729
AGGTCGG602.4680674E-422.49847225