Basic Statistics
Measure | Value |
---|---|
Filename | ERR1378233.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 900532 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 5322 | 0.590983996126734 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
AAGAGCGGTTCAGCAGGAATGCCGAGACCGAGCGTAATCTCGTATGCCGTC | 3246 | 0.36045359853952996 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAGCGTAATCTCGTATGCC | 2946 | 0.3271399572697028 | Illumina Paired End PCR Primer 2 (97% over 36bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
ATGCCGT | 400 | 0.0 | 38.81418 | 44 |
TATGCCG | 410 | 0.0 | 38.416294 | 43 |
TGCCGTC | 420 | 0.0 | 37.50162 | 45 |
TCGGAAG | 810 | 0.0 | 33.88659 | 28 |
GGTCGGA | 40 | 1.5609181E-5 | 33.74771 | 26 |
GTCGGAA | 40 | 1.5609181E-5 | 33.74771 | 27 |
ATCGGAA | 780 | 0.0 | 33.45927 | 27 |
AGATCGG | 790 | 0.0 | 33.320522 | 25 |
GATCGGA | 805 | 0.0 | 32.97913 | 26 |
CCGAGAT | 890 | 0.0 | 30.08223 | 22 |
CGAGATC | 935 | 0.0 | 28.63442 | 23 |
GAGATCG | 930 | 0.0 | 28.546448 | 24 |
AATGCCG | 1630 | 0.0 | 26.777325 | 18 |
TGCCGAG | 1635 | 0.0 | 26.55783 | 20 |
ATGCCGA | 1680 | 0.0 | 25.980381 | 19 |
GAATGCC | 1760 | 0.0 | 25.182951 | 17 |
GCCGAGA | 1745 | 0.0 | 23.981182 | 21 |
GGAATGC | 1865 | 0.0 | 23.523872 | 16 |
CGGAAGA | 1175 | 0.0 | 23.360117 | 29 |
AGGTCGG | 60 | 2.4680674E-4 | 22.498472 | 25 |