FastQCFastQC Report
Mon 6 Jun 2016
ERR1378232.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378232.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences475577
Sequences flagged as poor quality0
Sequence length51
%GC42

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT35180.7397329980213508Illumina Paired End PCR Primer 2 (96% over 30bp)
AAGAGCGGTTCAGCAGGAATGCCGAGACCGAGAGTCATCTCGTATGCCGTC22050.4636473168382828Illumina Paired End PCR Primer 2 (96% over 31bp)
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAGAGTCATCTCGTATGCC14410.30300035535780745Illumina Paired End PCR Primer 2 (97% over 34bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG2250.037.9970743
AGATCGG4050.037.21935325
ATCGGAA4200.036.42576227
GATCGGA4200.035.89008726
TGCCGTC2350.035.42280245
TCGGAAG4850.033.39948328
ATGCCGT2500.033.29743244
CGGGCGG352.8191827E-432.14037722
CCGAGAT4850.031.54395722
CGAGATC4800.031.4038323
GAGATCG4950.030.45219824
AATGCCG8650.028.87060518
TGCCGAG8650.028.6105120
ATGCCGA8750.028.54065719
GAATGCC9700.025.74543617
GCCGAGA9300.025.64318321
CGGAAGA6350.025.50984429
GGAATGC10250.025.0224616
ACCGAGA3800.022.49826627
AGGAATG11150.022.39737715