Basic Statistics
Measure | Value |
---|---|
Filename | ERR1378232.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 475577 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 3518 | 0.7397329980213508 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
AAGAGCGGTTCAGCAGGAATGCCGAGACCGAGAGTCATCTCGTATGCCGTC | 2205 | 0.4636473168382828 | Illumina Paired End PCR Primer 2 (96% over 31bp) |
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAGAGTCATCTCGTATGCC | 1441 | 0.30300035535780745 | Illumina Paired End PCR Primer 2 (97% over 34bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATGCCG | 225 | 0.0 | 37.99707 | 43 |
AGATCGG | 405 | 0.0 | 37.219353 | 25 |
ATCGGAA | 420 | 0.0 | 36.425762 | 27 |
GATCGGA | 420 | 0.0 | 35.890087 | 26 |
TGCCGTC | 235 | 0.0 | 35.422802 | 45 |
TCGGAAG | 485 | 0.0 | 33.399483 | 28 |
ATGCCGT | 250 | 0.0 | 33.297432 | 44 |
CGGGCGG | 35 | 2.8191827E-4 | 32.140377 | 22 |
CCGAGAT | 485 | 0.0 | 31.543957 | 22 |
CGAGATC | 480 | 0.0 | 31.40383 | 23 |
GAGATCG | 495 | 0.0 | 30.452198 | 24 |
AATGCCG | 865 | 0.0 | 28.870605 | 18 |
TGCCGAG | 865 | 0.0 | 28.61051 | 20 |
ATGCCGA | 875 | 0.0 | 28.540657 | 19 |
GAATGCC | 970 | 0.0 | 25.745436 | 17 |
GCCGAGA | 930 | 0.0 | 25.643183 | 21 |
CGGAAGA | 635 | 0.0 | 25.509844 | 29 |
GGAATGC | 1025 | 0.0 | 25.02246 | 16 |
ACCGAGA | 380 | 0.0 | 22.498266 | 27 |
AGGAATG | 1115 | 0.0 | 22.397377 | 15 |