Basic Statistics
Measure | Value |
---|---|
Filename | ERR1378220.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 898939 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 6108 | 0.6794676835691854 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
AAGAGCGGTTCAGCAGGAATGCCGAGACCGAGTGCAATCTCGTATGCCGTC | 3404 | 0.3786686304632461 | Illumina Paired End PCR Primer 2 (96% over 31bp) |
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAGTGCAATCTCGTATGCC | 3004 | 0.3341717291162137 | Illumina Paired End PCR Primer 2 (97% over 34bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATGCCG | 450 | 0.0 | 37.999905 | 43 |
ATGCCGT | 465 | 0.0 | 36.7741 | 44 |
TGCCGTC | 480 | 0.0 | 35.624912 | 45 |
TCGGAAG | 825 | 0.0 | 33.81622 | 28 |
AGATCGG | 815 | 0.0 | 33.679024 | 25 |
ATCGGAA | 815 | 0.0 | 33.679024 | 27 |
GATCGGA | 825 | 0.0 | 33.543507 | 26 |
CGAGATC | 930 | 0.0 | 29.756336 | 23 |
GAGATCG | 960 | 0.0 | 28.826452 | 24 |
AATGCCG | 1600 | 0.0 | 27.98275 | 18 |
CCGAGAT | 990 | 0.0 | 27.725662 | 22 |
ATGCCGA | 1615 | 0.0 | 27.722847 | 19 |
TGCCGAG | 1655 | 0.0 | 27.188753 | 20 |
GAATGCC | 1685 | 0.0 | 26.571156 | 17 |
GCCGAGA | 1735 | 0.0 | 25.675741 | 21 |
CGGAAGA | 1145 | 0.0 | 24.758387 | 29 |
GGAATGC | 1840 | 0.0 | 24.455101 | 16 |
CGAGTGC | 715 | 0.0 | 23.914694 | 29 |
CTCGTAT | 720 | 0.0 | 23.748621 | 39 |
CCGAGTG | 720 | 0.0 | 23.748621 | 28 |