FastQCFastQC Report
Mon 6 Jun 2016
ERR1378220.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378220.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences898939
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT61080.6794676835691854Illumina Paired End PCR Primer 2 (96% over 30bp)
AAGAGCGGTTCAGCAGGAATGCCGAGACCGAGTGCAATCTCGTATGCCGTC34040.3786686304632461Illumina Paired End PCR Primer 2 (96% over 31bp)
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAGTGCAATCTCGTATGCC30040.3341717291162137Illumina Paired End PCR Primer 2 (97% over 34bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG4500.037.99990543
ATGCCGT4650.036.774144
TGCCGTC4800.035.62491245
TCGGAAG8250.033.8162228
AGATCGG8150.033.67902425
ATCGGAA8150.033.67902427
GATCGGA8250.033.54350726
CGAGATC9300.029.75633623
GAGATCG9600.028.82645224
AATGCCG16000.027.9827518
CCGAGAT9900.027.72566222
ATGCCGA16150.027.72284719
TGCCGAG16550.027.18875320
GAATGCC16850.026.57115617
GCCGAGA17350.025.67574121
CGGAAGA11450.024.75838729
GGAATGC18400.024.45510116
CGAGTGC7150.023.91469429
CTCGTAT7200.023.74862139
CCGAGTG7200.023.74862128