Basic Statistics
Measure | Value |
---|---|
Filename | ERR1378219.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 681674 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 3905 | 0.5728544729592151 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
AAGAGCGGTTCAGCAGGAATGCCGAGACCGGATACGATCTCGTATGCCGTC | 2175 | 0.3190674721347741 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGATACGATCTCGTATGCC | 1409 | 0.20669704286799848 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
ATGCCGT | 285 | 0.0 | 37.892822 | 44 |
TCGGAAG | 500 | 0.0 | 37.798088 | 28 |
AGATCGG | 495 | 0.0 | 37.270844 | 25 |
TATGCCG | 290 | 0.0 | 37.2395 | 43 |
ATCGGAA | 490 | 0.0 | 37.192 | 27 |
GATCGGA | 505 | 0.0 | 36.532806 | 26 |
TGCCGTC | 290 | 0.0 | 36.463676 | 45 |
GAGATCG | 530 | 0.0 | 34.809563 | 24 |
CGAGATC | 545 | 0.0 | 34.264324 | 23 |
CCGAGAT | 575 | 0.0 | 33.25919 | 22 |
AATGCCG | 975 | 0.0 | 30.921515 | 18 |
TGCCGAG | 980 | 0.0 | 30.763754 | 20 |
ATGCCGA | 990 | 0.0 | 30.453007 | 19 |
GCCGAGA | 1015 | 0.0 | 29.259604 | 21 |
GAATGCC | 1090 | 0.0 | 27.659153 | 17 |
CGGAAGA | 690 | 0.0 | 27.389921 | 29 |
GGAATGC | 1140 | 0.0 | 26.64339 | 16 |
CCGGATA | 430 | 0.0 | 25.115011 | 28 |
ACCGGAT | 440 | 0.0 | 24.544212 | 27 |
CTCGTAT | 440 | 0.0 | 24.544212 | 39 |