Basic Statistics
Measure | Value |
---|---|
Filename | ERR1378209.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 565844 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 4316 | 0.7627543987388751 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
AAGAGCGGTTCAGCAGGAATGCCGAGACCGATACTCATCTCGTATGCCGTC | 2469 | 0.43633934441294775 | Illumina Paired End PCR Primer 2 (96% over 32bp) |
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATACTCATCTCGTATGCC | 1484 | 0.2622630972494186 | Illumina Paired End PCR Primer 2 (97% over 35bp) |
TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC | 573 | 0.10126465951746419 | Illumina Paired End PCR Primer 2 (100% over 35bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
AGATCGG | 550 | 0.0 | 37.634518 | 25 |
ATCGGAA | 555 | 0.0 | 37.295467 | 27 |
GATCGGA | 560 | 0.0 | 36.96247 | 26 |
TCGGAAG | 575 | 0.0 | 36.38952 | 28 |
TATGCCG | 295 | 0.0 | 35.848866 | 43 |
TGCCGTC | 310 | 0.0 | 34.84008 | 45 |
ATGCCGT | 325 | 0.0 | 33.232075 | 44 |
GAGATCG | 625 | 0.0 | 33.118374 | 24 |
CCGAGAT | 635 | 0.0 | 32.596825 | 22 |
AATGCCG | 975 | 0.0 | 32.536865 | 18 |
CGAGATC | 640 | 0.0 | 32.34216 | 23 |
ATGCCGA | 1020 | 0.0 | 31.321991 | 19 |
TGCCGAG | 1020 | 0.0 | 31.321991 | 20 |
GAATGCC | 1045 | 0.0 | 30.35736 | 17 |
CGGAAGA | 695 | 0.0 | 29.782711 | 29 |
GGAATGC | 1070 | 0.0 | 29.648075 | 16 |
GCCGAGA | 1085 | 0.0 | 29.03083 | 21 |
CCGATAC | 375 | 0.0 | 28.798586 | 28 |
CGATACT | 380 | 0.0 | 28.419659 | 29 |
ACCGATA | 385 | 0.0 | 28.050571 | 27 |