FastQCFastQC Report
Mon 6 Jun 2016
ERR1378208.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378208.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences999094
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT64930.6498887992521224Illumina Paired End PCR Primer 2 (96% over 30bp)
AAGAGCGGTTCAGCAGGAATGCCGAGACCGTGTATCATCTCGTATGCCGTC39760.3979605522603479Illumina Paired End PCR Primer 2 (96% over 30bp)
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTGTATCATCTCGTATGCC24090.24111845331870677Illumina Paired End PCR Primer 2 (96% over 33bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG4500.036.50247643
ACGGTAC250.002106275236.0024440
ATGCCGT4600.035.70894244
GATCGGA7350.035.5090626
ATCGGAA7350.035.20294627
AGATCGG7550.034.5684225
TCGGAAG7850.034.1071828
TGCCGTC5000.033.7522945
GAGATCG8750.029.8276124
CCGAGAT9050.029.33607122
CGAGATC9050.029.33607123
AATGCCG15250.028.91709918
ATGCCGA15350.028.43556619
TGCCGAG15550.028.06983420
GAATGCC16950.025.8841217
GCCGAGA16750.025.3872421
CGGAAGA10500.025.28489929
GGAATGC17750.024.71751216
CGTATGC6950.023.63469741
TCTCGTA7050.023.29712138