Basic Statistics
Measure | Value |
---|---|
Filename | ERR1378201.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 561902 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 5854 | 1.0418186801257159 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
AAGAGCGGTTCAGCAGGAATGCCGAGACCGTCGTATATCTCGTATGCCGTC | 3824 | 0.6805457179365797 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTCGTATATCTCGTATGCC | 3791 | 0.6746728077138007 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC | 872 | 0.15518720346252549 | Illumina Paired End PCR Primer 2 (100% over 35bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TGCCGTC | 390 | 0.0 | 38.653614 | 45 |
TATGCCG | 400 | 0.0 | 37.687275 | 43 |
ATGCCGT | 400 | 0.0 | 37.687275 | 44 |
GATCGGA | 885 | 0.0 | 35.844055 | 26 |
TCGGAAG | 930 | 0.0 | 35.077316 | 28 |
AGATCGG | 905 | 0.0 | 35.05192 | 25 |
ATCGGAA | 900 | 0.0 | 34.746704 | 27 |
CCGAGAT | 955 | 0.0 | 33.6879 | 22 |
GAGATCG | 945 | 0.0 | 33.568245 | 24 |
CGAGATC | 950 | 0.0 | 33.391567 | 23 |
GTCGGAA | 40 | 6.1656104E-4 | 28.122332 | 27 |
AATGCCG | 1790 | 0.0 | 27.52532 | 18 |
ATGCCGA | 1785 | 0.0 | 27.476383 | 19 |
TGCCGAG | 1795 | 0.0 | 27.07264 | 20 |
GCCGAGA | 1820 | 0.0 | 25.959074 | 21 |
GAATGCC | 1915 | 0.0 | 25.728628 | 17 |
GGAATGC | 1940 | 0.0 | 25.281107 | 16 |
CGGAAGA | 1310 | 0.0 | 25.073957 | 29 |
AGGAATG | 2075 | 0.0 | 23.744734 | 15 |
GAAGAGC | 1450 | 0.0 | 22.65302 | 31 |