FastQCFastQC Report
Mon 6 Jun 2016
ERR1378201.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378201.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences561902
Sequences flagged as poor quality0
Sequence length51
%GC42

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT58541.0418186801257159Illumina Paired End PCR Primer 2 (96% over 30bp)
AAGAGCGGTTCAGCAGGAATGCCGAGACCGTCGTATATCTCGTATGCCGTC38240.6805457179365797Illumina Paired End PCR Primer 2 (96% over 30bp)
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTCGTATATCTCGTATGCC37910.6746728077138007Illumina Paired End PCR Primer 2 (96% over 33bp)
TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC8720.15518720346252549Illumina Paired End PCR Primer 2 (100% over 35bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TGCCGTC3900.038.65361445
TATGCCG4000.037.68727543
ATGCCGT4000.037.68727544
GATCGGA8850.035.84405526
TCGGAAG9300.035.07731628
AGATCGG9050.035.0519225
ATCGGAA9000.034.74670427
CCGAGAT9550.033.687922
GAGATCG9450.033.56824524
CGAGATC9500.033.39156723
GTCGGAA406.1656104E-428.12233227
AATGCCG17900.027.5253218
ATGCCGA17850.027.47638319
TGCCGAG17950.027.0726420
GCCGAGA18200.025.95907421
GAATGCC19150.025.72862817
GGAATGC19400.025.28110716
CGGAAGA13100.025.07395729
AGGAATG20750.023.74473415
GAAGAGC14500.022.6530231