Basic Statistics
Measure | Value |
---|---|
Filename | ERR1378198.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 867021 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 7251 | 0.8363119232406134 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
AAGAGCGGTTCAGCAGGAATGCCGAGACCGATAGTAATCTCGTATGCCGTC | 4231 | 0.4879927937154925 | Illumina Paired End PCR Primer 2 (96% over 32bp) |
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATAGTAATCTCGTATGCC | 2792 | 0.3220221886205755 | Illumina Paired End PCR Primer 2 (97% over 35bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
ATGCCGT | 515 | 0.0 | 38.006786 | 44 |
TGCCGTC | 515 | 0.0 | 38.006786 | 45 |
TATGCCG | 530 | 0.0 | 36.93112 | 43 |
ATCGGAA | 1045 | 0.0 | 35.092995 | 27 |
GATCGGA | 1035 | 0.0 | 34.99731 | 26 |
TCGGAAG | 1065 | 0.0 | 34.645226 | 28 |
AGATCGG | 1050 | 0.0 | 34.49735 | 25 |
GAGATCG | 1110 | 0.0 | 32.42994 | 24 |
CGAGATC | 1120 | 0.0 | 32.140385 | 23 |
CCGAGAT | 1150 | 0.0 | 31.30194 | 22 |
ATGCCGA | 1880 | 0.0 | 29.917912 | 19 |
AATGCCG | 1895 | 0.0 | 29.79982 | 18 |
TGCCGAG | 1890 | 0.0 | 29.640577 | 20 |
GAATGCC | 2020 | 0.0 | 28.06715 | 17 |
CGGAAGA | 1325 | 0.0 | 27.677116 | 29 |
GCCGAGA | 2025 | 0.0 | 27.442333 | 21 |
ACCGATA | 725 | 0.0 | 26.997923 | 27 |
GGAATGC | 2105 | 0.0 | 26.933798 | 16 |
CCGATAG | 745 | 0.0 | 26.575138 | 28 |
CGATAGT | 745 | 0.0 | 26.575138 | 29 |