FastQCFastQC Report
Mon 6 Jun 2016
ERR1378196.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378196.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences884848
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT59240.6694935175306945Illumina Paired End PCR Primer 2 (96% over 30bp)
AAGAGCGGTTCAGCAGGAATGCCGAGACCGATATGAATCTCGTATGCCGTC35490.40108583621141713Illumina Paired End PCR Primer 2 (97% over 34bp)
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATATGAATCTCGTATGCC23090.2609487731226154Illumina Paired End PCR Primer 2 (97% over 37bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG5250.040.2836943
ATGCCGT5350.039.53072444
TGCCGTC5400.039.16469645
TCGGAAG8250.035.1800528
AGATCGG7950.034.80957425
ATCGGAA8000.034.5920127
GATCGGA7950.034.5265726
GAGATCG8150.033.6792924
CCGAGAT8250.033.5437722
CGAGATC8650.031.99261523
AATGCCG16200.031.10954918
TGCCGAG16250.030.87537220
ATGCCGA16500.030.5439219
GCCGAGA16650.029.32285121
GAATGCC17650.028.42633417
GTCGGAA406.1668234E-428.12358727
CGATATG7750.027.28895229
GGAATGC18850.026.73605716
CGTATGC8000.026.43617241
CCGATAT8000.026.43617228