Basic Statistics
Measure | Value |
---|---|
Filename | ERR1378196.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 884848 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 5924 | 0.6694935175306945 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
AAGAGCGGTTCAGCAGGAATGCCGAGACCGATATGAATCTCGTATGCCGTC | 3549 | 0.40108583621141713 | Illumina Paired End PCR Primer 2 (97% over 34bp) |
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATATGAATCTCGTATGCC | 2309 | 0.2609487731226154 | Illumina Paired End PCR Primer 2 (97% over 37bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATGCCG | 525 | 0.0 | 40.28369 | 43 |
ATGCCGT | 535 | 0.0 | 39.530724 | 44 |
TGCCGTC | 540 | 0.0 | 39.164696 | 45 |
TCGGAAG | 825 | 0.0 | 35.18005 | 28 |
AGATCGG | 795 | 0.0 | 34.809574 | 25 |
ATCGGAA | 800 | 0.0 | 34.59201 | 27 |
GATCGGA | 795 | 0.0 | 34.52657 | 26 |
GAGATCG | 815 | 0.0 | 33.67929 | 24 |
CCGAGAT | 825 | 0.0 | 33.54377 | 22 |
CGAGATC | 865 | 0.0 | 31.992615 | 23 |
AATGCCG | 1620 | 0.0 | 31.109549 | 18 |
TGCCGAG | 1625 | 0.0 | 30.875372 | 20 |
ATGCCGA | 1650 | 0.0 | 30.54392 | 19 |
GCCGAGA | 1665 | 0.0 | 29.322851 | 21 |
GAATGCC | 1765 | 0.0 | 28.426334 | 17 |
GTCGGAA | 40 | 6.1668234E-4 | 28.123587 | 27 |
CGATATG | 775 | 0.0 | 27.288952 | 29 |
GGAATGC | 1885 | 0.0 | 26.736057 | 16 |
CGTATGC | 800 | 0.0 | 26.436172 | 41 |
CCGATAT | 800 | 0.0 | 26.436172 | 28 |