Basic Statistics
Measure | Value |
---|---|
Filename | ERR1378193.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 531273 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAATTAGATCTCGTATGCC | 1371 | 0.2580594157805874 | Illumina Paired End PCR Primer 2 (97% over 34bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GACACGA | 20 | 7.032464E-4 | 44.996613 | 31 |
CTCGTAT | 135 | 0.0 | 39.996986 | 42 |
AGACCGA | 135 | 0.0 | 39.996986 | 28 |
GAGACCG | 135 | 0.0 | 39.993225 | 27 |
ATCTCGT | 145 | 0.0 | 38.793835 | 40 |
GCGGTTC | 140 | 0.0 | 38.56489 | 8 |
TCGTATG | 140 | 0.0 | 38.56489 | 43 |
CGTATGC | 150 | 0.0 | 35.997288 | 44 |
GACCGAA | 150 | 0.0 | 35.997288 | 29 |
TCTCGTA | 150 | 0.0 | 35.997288 | 41 |
CCGAATT | 150 | 0.0 | 35.997288 | 31 |
AGCGGTT | 150 | 0.0 | 35.9939 | 7 |
CCGAGAC | 165 | 0.0 | 34.088345 | 25 |
GAGCGGT | 160 | 0.0 | 33.76653 | 6 |
ACCGAAT | 160 | 0.0 | 33.74746 | 30 |
AATGCCG | 160 | 0.0 | 33.74746 | 21 |
CGGTTCA | 160 | 0.0 | 33.74428 | 9 |
AGAGCGG | 165 | 0.0 | 32.7433 | 5 |
CGAATTA | 165 | 0.0 | 32.724808 | 32 |
AAGAGCG | 170 | 0.0 | 31.780262 | 4 |