FastQCFastQC Report
Mon 6 Jun 2016
ERR1378193.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378193.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences531273
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAATTAGATCTCGTATGCC13710.2580594157805874Illumina Paired End PCR Primer 2 (97% over 34bp)

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GACACGA207.032464E-444.99661331
CTCGTAT1350.039.99698642
AGACCGA1350.039.99698628
GAGACCG1350.039.99322527
ATCTCGT1450.038.79383540
GCGGTTC1400.038.564898
TCGTATG1400.038.5648943
CGTATGC1500.035.99728844
GACCGAA1500.035.99728829
TCTCGTA1500.035.99728841
CCGAATT1500.035.99728831
AGCGGTT1500.035.99397
CCGAGAC1650.034.08834525
GAGCGGT1600.033.766536
ACCGAAT1600.033.7474630
AATGCCG1600.033.7474621
CGGTTCA1600.033.744289
AGAGCGG1650.032.74335
CGAATTA1650.032.72480832
AAGAGCG1700.031.7802624