Basic Statistics
Measure | Value |
---|---|
Filename | ERR1378189.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 787464 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTAACAAATCTCGTATGCC | 1241 | 0.15759450590757165 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CCGGTAG | 20 | 7.034474E-4 | 44.9967 | 31 |
GACCGTA | 160 | 0.0 | 39.372112 | 29 |
AGCCGGT | 25 | 0.0021074652 | 35.99736 | 29 |
GATCGGA | 50 | 4.8787115E-8 | 35.99736 | 18 |
GCCGGTA | 25 | 0.0021074652 | 35.99736 | 30 |
CGGTAGT | 25 | 0.0021074652 | 35.99736 | 32 |
AGACCGT | 175 | 0.0 | 35.997356 | 28 |
ATCTCGT | 190 | 0.0 | 35.52371 | 40 |
CTCGTAT | 200 | 0.0 | 34.87244 | 42 |
TCTCGTA | 200 | 0.0 | 34.87244 | 41 |
CGTATGC | 195 | 0.0 | 34.612843 | 44 |
TCGTATG | 195 | 0.0 | 34.612843 | 43 |
GAGACCG | 185 | 0.0 | 34.051556 | 27 |
GCGGTTC | 220 | 0.0 | 33.747524 | 8 |
CGGAAGA | 215 | 0.0 | 33.50932 | 1 |
ACCGTAA | 195 | 0.0 | 33.459084 | 30 |
AAGAGCG | 225 | 0.0 | 33.01435 | 4 |
AGATCGG | 55 | 1.1276643E-7 | 32.724873 | 17 |
ATCGGAA | 55 | 1.1276643E-7 | 32.724873 | 19 |
CCGTAAC | 200 | 0.0 | 32.62261 | 31 |