FastQCFastQC Report
Mon 6 Jun 2016
ERR1378189.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378189.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences787464
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTAACAAATCTCGTATGCC12410.15759450590757165Illumina Paired End PCR Primer 2 (96% over 33bp)

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCGGTAG207.034474E-444.996731
GACCGTA1600.039.37211229
AGCCGGT250.002107465235.9973629
GATCGGA504.8787115E-835.9973618
GCCGGTA250.002107465235.9973630
CGGTAGT250.002107465235.9973632
AGACCGT1750.035.99735628
ATCTCGT1900.035.5237140
CTCGTAT2000.034.8724442
TCTCGTA2000.034.8724441
CGTATGC1950.034.61284344
TCGTATG1950.034.61284343
GAGACCG1850.034.05155627
GCGGTTC2200.033.7475248
CGGAAGA2150.033.509321
ACCGTAA1950.033.45908430
AAGAGCG2250.033.014354
AGATCGG551.1276643E-732.72487317
ATCGGAA551.1276643E-732.72487319
CCGTAAC2000.032.6226131