FastQCFastQC Report
Mon 6 Jun 2016
ERR1378182.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378182.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1128424
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTATGC1050.040.71111744
GCGGGTT250.002100115236.0243341
TCTCGTA1400.033.74737541
TCGTATG1300.032.88205743
CTCGTAT1400.030.53333942
AGACCGA1400.030.53333928
ATCTCGT1700.029.11796440
AGAGCGG1650.028.645565
GACCGAG1550.027.578529
ACCGAGA1650.027.27060530
GAGACCG1600.025.3105327
GAGCGGT1800.025.0080286
ATGCCGA2050.024.14446322
AAGAGCG1950.023.0843354
GCGGTTC1950.023.075138
GATCGGA500.002265608622.4982518
AGCGGTT2000.022.498257
AATGCCG2050.021.94951221
TGCCGAG2050.021.94951223
CGGTTCA2150.020.9286049