Basic Statistics
Measure | Value |
---|---|
Filename | ERR1378176.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 800857 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGCATGAATCTCGTATGCC | 1439 | 0.17968251510569302 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
AGACCGG | 175 | 0.0 | 37.280903 | 28 |
CGTATGC | 190 | 0.0 | 36.70579 | 44 |
TCTCGTA | 190 | 0.0 | 34.337673 | 41 |
CGGCATG | 185 | 0.0 | 34.04966 | 32 |
CTCGTAT | 195 | 0.0 | 33.457222 | 42 |
CCGGCAT | 190 | 0.0 | 33.153618 | 31 |
GACCGGC | 190 | 0.0 | 33.153618 | 29 |
ATCGGAA | 95 | 0.0 | 33.153618 | 19 |
TCGTATG | 205 | 0.0 | 32.92258 | 43 |
GTATGCC | 220 | 0.0 | 32.723053 | 45 |
ACCGGCA | 195 | 0.0 | 32.303524 | 30 |
ATCTCGT | 210 | 0.0 | 32.13871 | 40 |
GATCGGA | 100 | 0.0 | 31.495935 | 18 |
GAGACCG | 240 | 0.0 | 30.93351 | 27 |
TCTAACG | 30 | 0.005149585 | 29.99613 | 27 |
AGATCGG | 105 | 0.0 | 29.996128 | 17 |
AGCGGTT | 255 | 0.0 | 28.231653 | 7 |
AATCTCG | 250 | 0.0 | 27.8964 | 39 |
GCGGTTC | 265 | 0.0 | 27.166306 | 8 |
AGAGCGG | 270 | 0.0 | 26.684883 | 5 |