FastQCFastQC Report
Mon 6 Jun 2016
ERR1378176.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378176.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences800857
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGCATGAATCTCGTATGCC14390.17968251510569302Illumina Paired End PCR Primer 2 (96% over 33bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGACCGG1750.037.28090328
CGTATGC1900.036.7057944
TCTCGTA1900.034.33767341
CGGCATG1850.034.0496632
CTCGTAT1950.033.45722242
CCGGCAT1900.033.15361831
GACCGGC1900.033.15361829
ATCGGAA950.033.15361819
TCGTATG2050.032.9225843
GTATGCC2200.032.72305345
ACCGGCA1950.032.30352430
ATCTCGT2100.032.1387140
GATCGGA1000.031.49593518
GAGACCG2400.030.9335127
TCTAACG300.00514958529.9961327
AGATCGG1050.029.99612817
AGCGGTT2550.028.2316537
AATCTCG2500.027.896439
GCGGTTC2650.027.1663068
AGAGCGG2700.026.6848835