Basic Statistics
Measure | Value |
---|---|
Filename | ERR1378174.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1162879 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGTACGAATCTCGTATGCC | 1289 | 0.11084558238647357 | Illumina Paired End PCR Primer 2 (97% over 35bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGGTACG | 190 | 0.0 | 43.812817 | 32 |
CTCGTAT | 205 | 0.0 | 40.607002 | 42 |
CCGGTAC | 205 | 0.0 | 40.607002 | 31 |
ACGAATC | 200 | 0.0 | 40.497253 | 36 |
TCGTATG | 215 | 0.0 | 39.764744 | 43 |
GGTACGA | 210 | 0.0 | 39.640167 | 33 |
ACCGGTA | 220 | 0.0 | 38.860996 | 30 |
CGTATGC | 235 | 0.0 | 38.295277 | 44 |
TCTCGTA | 220 | 0.0 | 37.83834 | 41 |
GACCGGT | 215 | 0.0 | 37.671864 | 29 |
TACGAAT | 225 | 0.0 | 36.99749 | 35 |
GTACGAA | 225 | 0.0 | 36.99749 | 34 |
CGAATCT | 225 | 0.0 | 35.99756 | 37 |
AGACCGG | 230 | 0.0 | 35.215 | 28 |
GAGACCG | 235 | 0.0 | 34.465748 | 27 |
AGATCGG | 100 | 0.0 | 33.74771 | 17 |
GATCGGA | 100 | 0.0 | 33.74771 | 18 |
TCGGAAG | 100 | 0.0 | 33.74771 | 20 |
ATCTCGT | 260 | 0.0 | 31.151733 | 40 |
AATCTCG | 265 | 0.0 | 30.563965 | 39 |