FastQCFastQC Report
Mon 6 Jun 2016
ERR1378155.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378155.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1121291
Sequences flagged as poor quality0
Sequence length51
%GC39

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTGAGACATCTCGTATGCC13420.11968347199790243Illumina Paired End PCR Primer 2 (96% over 33bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCGTAT2000.039.37289442
CGTATGC2050.038.4125844
GACCGTG2000.038.2479529
GATCGGA1500.037.49799318
AGATCGG1550.036.2883817
AGACCGT2200.035.79353728
ACCGTGA2300.035.21550430
ATCGGAA1600.035.1543719
GAGACCG2250.034.99812727
TCTCGTA2250.034.99812741
TCGTATG2250.034.99812743
ATCTCGT2550.031.76300640
TCGGAAG1800.031.24832520
CCGTGAG2700.029.99839631
CATCTCG2900.029.48118239
CGTGAGA2800.028.92702132
GTATGCC2900.027.1537245
AGAGCGG3450.023.4853845
GAGCGGT3500.023.1498786
AGCGGTT3550.022.8156817