Basic Statistics
Measure | Value |
---|---|
Filename | ERR1378155.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1121291 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 39 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTGAGACATCTCGTATGCC | 1342 | 0.11968347199790243 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CTCGTAT | 200 | 0.0 | 39.372894 | 42 |
CGTATGC | 205 | 0.0 | 38.41258 | 44 |
GACCGTG | 200 | 0.0 | 38.24795 | 29 |
GATCGGA | 150 | 0.0 | 37.497993 | 18 |
AGATCGG | 155 | 0.0 | 36.28838 | 17 |
AGACCGT | 220 | 0.0 | 35.793537 | 28 |
ACCGTGA | 230 | 0.0 | 35.215504 | 30 |
ATCGGAA | 160 | 0.0 | 35.15437 | 19 |
GAGACCG | 225 | 0.0 | 34.998127 | 27 |
TCTCGTA | 225 | 0.0 | 34.998127 | 41 |
TCGTATG | 225 | 0.0 | 34.998127 | 43 |
ATCTCGT | 255 | 0.0 | 31.763006 | 40 |
TCGGAAG | 180 | 0.0 | 31.248325 | 20 |
CCGTGAG | 270 | 0.0 | 29.998396 | 31 |
CATCTCG | 290 | 0.0 | 29.481182 | 39 |
CGTGAGA | 280 | 0.0 | 28.927021 | 32 |
GTATGCC | 290 | 0.0 | 27.15372 | 45 |
AGAGCGG | 345 | 0.0 | 23.485384 | 5 |
GAGCGGT | 350 | 0.0 | 23.149878 | 6 |
AGCGGTT | 355 | 0.0 | 22.815681 | 7 |