Basic Statistics
Measure | Value |
---|---|
Filename | ERR1378154.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 870762 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATGCAGATCTCGTATGCC | 1392 | 0.15985998470305318 | Illumina Paired End PCR Primer 2 (97% over 35bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CTCGTAT | 145 | 0.0 | 37.239906 | 42 |
TCTCGTA | 145 | 0.0 | 37.239906 | 41 |
CCGATGC | 145 | 0.0 | 35.688244 | 31 |
GACCGAT | 145 | 0.0 | 35.686195 | 29 |
ACCGATG | 155 | 0.0 | 33.38386 | 30 |
GAGCGGT | 170 | 0.0 | 33.105938 | 6 |
GCGGTTC | 170 | 0.0 | 33.083126 | 8 |
TCGTATG | 165 | 0.0 | 32.725975 | 43 |
CGATGCA | 160 | 0.0 | 32.34247 | 32 |
ATCGGAA | 35 | 2.8223754E-4 | 32.137894 | 19 |
AGACCGA | 170 | 0.0 | 31.761625 | 28 |
AGCGGTT | 180 | 0.0 | 31.245176 | 7 |
GAGACCG | 170 | 0.0 | 30.438225 | 27 |
AGAGCGG | 185 | 0.0 | 30.421673 | 5 |
GTATGCC | 180 | 0.0 | 29.998814 | 45 |
CGGAAGA | 205 | 0.0 | 29.658522 | 1 |
CGTATGC | 185 | 0.0 | 29.188036 | 44 |
CCGAGAC | 205 | 0.0 | 28.533817 | 25 |
ATCTCGT | 190 | 0.0 | 28.41993 | 40 |
GATCGGA | 40 | 6.170505E-4 | 28.120655 | 18 |