FastQCFastQC Report
Mon 6 Jun 2016
ERR1378154.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378154.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences870762
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATGCAGATCTCGTATGCC13920.15985998470305318Illumina Paired End PCR Primer 2 (97% over 35bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCGTAT1450.037.23990642
TCTCGTA1450.037.23990641
CCGATGC1450.035.68824431
GACCGAT1450.035.68619529
ACCGATG1550.033.3838630
GAGCGGT1700.033.1059386
GCGGTTC1700.033.0831268
TCGTATG1650.032.72597543
CGATGCA1600.032.3424732
ATCGGAA352.8223754E-432.13789419
AGACCGA1700.031.76162528
AGCGGTT1800.031.2451767
GAGACCG1700.030.43822527
AGAGCGG1850.030.4216735
GTATGCC1800.029.99881445
CGGAAGA2050.029.6585221
CGTATGC1850.029.18803644
CCGAGAC2050.028.53381725
ATCTCGT1900.028.4199340
GATCGGA406.170505E-428.12065518