FastQCFastQC Report
Mon 6 Jun 2016
ERR1378152.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378152.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences487279
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTGACAGATCTCGTATGCC15290.3137832740585989Illumina Paired End PCR Primer 2 (96% over 33bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCGTAT1750.042.4273142
TCGTATG1750.042.4273143
CGTATGC1800.041.24877544
TCTCGTA1800.041.24877541
CCGTGAC1750.041.14163631
GAGACCG1850.040.13394527
ACCGTGA1850.038.91776330
ATCTCGT2000.038.24886740
GACCGTG1900.037.89361229
AGACCGT2000.037.12389828
CGTGACA1950.036.92198632
TACGATT250.002104105736.006326
AGCGGTT2050.035.120917
GATCGGA458.6882756E-734.99896218
TCGGAAG458.6882756E-734.99896220
ATCGGAA458.6882756E-734.99896219
CCGAGAC2150.034.5338625
GCGGTTC2100.034.28478
CGGTTCA2250.033.998999
CGGAAGA2250.033.0091821