Basic Statistics
Measure | Value |
---|---|
Filename | ERR1378152.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 487279 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTGACAGATCTCGTATGCC | 1529 | 0.3137832740585989 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CTCGTAT | 175 | 0.0 | 42.42731 | 42 |
TCGTATG | 175 | 0.0 | 42.42731 | 43 |
CGTATGC | 180 | 0.0 | 41.248775 | 44 |
TCTCGTA | 180 | 0.0 | 41.248775 | 41 |
CCGTGAC | 175 | 0.0 | 41.141636 | 31 |
GAGACCG | 185 | 0.0 | 40.133945 | 27 |
ACCGTGA | 185 | 0.0 | 38.917763 | 30 |
ATCTCGT | 200 | 0.0 | 38.248867 | 40 |
GACCGTG | 190 | 0.0 | 37.893612 | 29 |
AGACCGT | 200 | 0.0 | 37.123898 | 28 |
CGTGACA | 195 | 0.0 | 36.921986 | 32 |
TACGATT | 25 | 0.0021041057 | 36.00632 | 6 |
AGCGGTT | 205 | 0.0 | 35.12091 | 7 |
GATCGGA | 45 | 8.6882756E-7 | 34.998962 | 18 |
TCGGAAG | 45 | 8.6882756E-7 | 34.998962 | 20 |
ATCGGAA | 45 | 8.6882756E-7 | 34.998962 | 19 |
CCGAGAC | 215 | 0.0 | 34.53386 | 25 |
GCGGTTC | 210 | 0.0 | 34.2847 | 8 |
CGGTTCA | 225 | 0.0 | 33.99899 | 9 |
CGGAAGA | 225 | 0.0 | 33.009182 | 1 |