FastQCFastQC Report
Mon 6 Jun 2016
ERR1378151.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378151.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1308191
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAGACACATCTCGTATGCC14990.11458571416559202Illumina Paired End PCR Primer 2 (97% over 34bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GATCGGA1550.039.19018618
CGTATGC1550.036.28859344
CTCGTAT1750.034.71263542
GACCGAG1750.032.1413329
TCTCGTA1800.031.24851441
TCGTATG1800.031.24851443
AGATCGG1950.031.15117317
ATCGGAA1950.031.15117319
ATCTCGT1850.030.4039640
AGACCGA1900.029.60385528
ACCGAGA2000.029.2486130
TCGGAAG2300.027.38895620
CATCTCG2100.026.7844439
CGAGACA2100.026.7844432
GAGACCG2350.023.93503227
GTATGCC2350.023.93503245
CGTACAA500.002259872422.5083943
CCGAGAT3000.020.998214
GCGGTTC2700.020.83234428
GAGCGGT2900.020.17145326