Basic Statistics
Measure | Value |
---|---|
Filename | ERR1378151.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1308191 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAGACACATCTCGTATGCC | 1499 | 0.11458571416559202 | Illumina Paired End PCR Primer 2 (97% over 34bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GATCGGA | 155 | 0.0 | 39.190186 | 18 |
CGTATGC | 155 | 0.0 | 36.288593 | 44 |
CTCGTAT | 175 | 0.0 | 34.712635 | 42 |
GACCGAG | 175 | 0.0 | 32.14133 | 29 |
TCTCGTA | 180 | 0.0 | 31.248514 | 41 |
TCGTATG | 180 | 0.0 | 31.248514 | 43 |
AGATCGG | 195 | 0.0 | 31.151173 | 17 |
ATCGGAA | 195 | 0.0 | 31.151173 | 19 |
ATCTCGT | 185 | 0.0 | 30.40396 | 40 |
AGACCGA | 190 | 0.0 | 29.603855 | 28 |
ACCGAGA | 200 | 0.0 | 29.24861 | 30 |
TCGGAAG | 230 | 0.0 | 27.388956 | 20 |
CATCTCG | 210 | 0.0 | 26.78444 | 39 |
CGAGACA | 210 | 0.0 | 26.78444 | 32 |
GAGACCG | 235 | 0.0 | 23.935032 | 27 |
GTATGCC | 235 | 0.0 | 23.935032 | 45 |
CGTACAA | 50 | 0.0022598724 | 22.508394 | 3 |
CCGAGAT | 300 | 0.0 | 20.9982 | 14 |
GCGGTTC | 270 | 0.0 | 20.832344 | 28 |
GAGCGGT | 290 | 0.0 | 20.171453 | 26 |