FastQCFastQC Report
Mon 6 Jun 2016
ERR1378147.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378147.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences866711
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGACCGT800.036.56109628
GACCGTG850.034.41044229
ATCTCGT900.032.50062640
CGTATGC900.032.50062644
AGATCGG501.9814706E-631.49878717
CCGTGTA950.030.78828831
CTCGTAT901.2732926E-1130.00057642
TCTCGTA901.2732926E-1130.00057641
ACATCGG300.00514753729.99884621
GAGACCG1053.6379788E-1227.85607127
TCGTATG1053.6379788E-1227.85607143
GCGGTTC1105.456968E-1226.5898868
GATCGGA608.190957E-626.2489918
CGTGTAT1159.094947E-1225.43380532
CATCTCG1252.910383E-1123.40045239
AGCGGTT1252.910383E-1123.39917
CCGAGAC1252.910383E-1123.399125
ACCGTGT1252.910383E-1123.399130
AGAGCGG1358.367351E-1121.6695845
GTATGCC1358.367351E-1121.66708445