Basic Statistics
Measure | Value |
---|---|
Filename | ERR1378139.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1251166 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 39 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TCTCGTA | 200 | 0.0 | 37.12108 | 41 |
CTCGTAT | 205 | 0.0 | 36.215683 | 42 |
GACCGTG | 200 | 0.0 | 35.996197 | 29 |
AGACCGT | 205 | 0.0 | 35.118237 | 28 |
CGTATGC | 215 | 0.0 | 34.53123 | 44 |
TATCTCG | 225 | 0.0 | 33.996407 | 39 |
TCGTATG | 225 | 0.0 | 33.996407 | 43 |
CGTGTAC | 220 | 0.0 | 33.746433 | 32 |
GCGGTTC | 230 | 0.0 | 33.257355 | 8 |
AGAGCGG | 235 | 0.0 | 32.57188 | 5 |
CCGTGTA | 235 | 0.0 | 31.592405 | 31 |
AAGAGCG | 260 | 0.0 | 31.17173 | 4 |
ATCTCGT | 245 | 0.0 | 30.302917 | 40 |
GAGACCG | 245 | 0.0 | 30.302917 | 27 |
CCGCTAG | 30 | 0.0051500904 | 29.99683 | 41 |
CGGTTCA | 265 | 0.0 | 29.713842 | 9 |
GAGCGGT | 265 | 0.0 | 28.884499 | 6 |
AGCGGTT | 285 | 0.0 | 26.83927 | 7 |
CCGAGAC | 270 | 0.0 | 26.66385 | 25 |
ACCGTGT | 290 | 0.0 | 25.600744 | 30 |