FastQCFastQC Report
Mon 6 Jun 2016
ERR1378139.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378139.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1251166
Sequences flagged as poor quality0
Sequence length51
%GC39

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCTCGTA2000.037.1210841
CTCGTAT2050.036.21568342
GACCGTG2000.035.99619729
AGACCGT2050.035.11823728
CGTATGC2150.034.5312344
TATCTCG2250.033.99640739
TCGTATG2250.033.99640743
CGTGTAC2200.033.74643332
GCGGTTC2300.033.2573558
AGAGCGG2350.032.571885
CCGTGTA2350.031.59240531
AAGAGCG2600.031.171734
ATCTCGT2450.030.30291740
GAGACCG2450.030.30291727
CCGCTAG300.005150090429.9968341
CGGTTCA2650.029.7138429
GAGCGGT2650.028.8844996
AGCGGTT2850.026.839277
CCGAGAC2700.026.6638525
ACCGTGT2900.025.60074430