Basic Statistics
Measure | Value |
---|---|
Filename | ERR1378129.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 668888 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 1635 | 0.2444355407781273 | No Hit |
AAGAGCGGTTCAGCAGGAATGCCGAGACCGAGTCAAATCTCGTATGCCGTC | 1462 | 0.21857171903218475 | Illumina Paired End PCR Primer 2 (96% over 31bp) |
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAGTCAAATCTCGTATGCC | 1252 | 0.18717632847352622 | Illumina Paired End PCR Primer 2 (97% over 34bp) |
TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 1079 | 0.1613125067275837 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TAAGCCG | 215 | 0.0 | 42.901134 | 13 |
TGACGTC | 225 | 0.0 | 40.994415 | 21 |
GCCGATG | 230 | 0.0 | 40.10323 | 16 |
AAGCCGA | 230 | 0.0 | 40.10323 | 14 |
ATGACGT | 230 | 0.0 | 40.10323 | 20 |
AGCCGAT | 235 | 0.0 | 39.24997 | 15 |
CGTCATA | 235 | 0.0 | 39.24997 | 24 |
TCGGTAT | 185 | 0.0 | 38.913616 | 23 |
ATTCGGT | 190 | 0.0 | 37.889576 | 21 |
AATTCGG | 190 | 0.0 | 37.889576 | 20 |
GGCGGTC | 185 | 0.0 | 37.700386 | 35 |
CCGATGA | 245 | 0.0 | 37.647934 | 17 |
GCGGTCT | 195 | 0.0 | 36.92081 | 36 |
CGGGGAA | 195 | 0.0 | 36.91805 | 15 |
GAATTCG | 195 | 0.0 | 36.91805 | 19 |
AGGCGGT | 190 | 0.0 | 36.70827 | 34 |
GACGTCA | 255 | 0.0 | 36.17154 | 22 |
CGATGAC | 255 | 0.0 | 36.17154 | 18 |
TCGGGGA | 200 | 0.0 | 35.995094 | 14 |
TGCCGTC | 195 | 0.0 | 35.777733 | 45 |