FastQCFastQC Report
Mon 6 Jun 2016
ERR1378129.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378129.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences668888
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA16350.2444355407781273No Hit
AAGAGCGGTTCAGCAGGAATGCCGAGACCGAGTCAAATCTCGTATGCCGTC14620.21857171903218475Illumina Paired End PCR Primer 2 (96% over 31bp)
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAGTCAAATCTCGTATGCC12520.18717632847352622Illumina Paired End PCR Primer 2 (97% over 34bp)
TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA10790.1613125067275837No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TAAGCCG2150.042.90113413
TGACGTC2250.040.99441521
GCCGATG2300.040.1032316
AAGCCGA2300.040.1032314
ATGACGT2300.040.1032320
AGCCGAT2350.039.2499715
CGTCATA2350.039.2499724
TCGGTAT1850.038.91361623
ATTCGGT1900.037.88957621
AATTCGG1900.037.88957620
GGCGGTC1850.037.70038635
CCGATGA2450.037.64793417
GCGGTCT1950.036.9208136
CGGGGAA1950.036.9180515
GAATTCG1950.036.9180519
AGGCGGT1900.036.7082734
GACGTCA2550.036.1715422
CGATGAC2550.036.1715418
TCGGGGA2000.035.99509414
TGCCGTC1950.035.77773345