ERR1378125.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	ERR1378125.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	630221
Sequences flagged as poor quality	0
Sequence length	51
%GC	40

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA	1573	0.24959498334711158	No Hit
TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA	1117	0.17723941284089234	No Hit
AAGAGCGGTTCAGCAGGAATGCCGAGACCGCATTTTATCTCGTATGCCGTC	1062	0.16851231552106324	Illumina Paired End PCR Primer 2 (96% over 30bp)
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCATTTTATCTCGTATGCC	949	0.1505820973912326	Illumina Paired End PCR Primer 2 (96% over 33bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TTCGGTA	170	43.67108	22
TCGGTAT	170	43.67108	23
TGCCGTC	110	42.96288	45
CGGTATT	175	42.423336	24
AGGCGGT	185	41.346245	34
GCGGTCT	195	39.22593	36
CGGTCTC	195	39.22593	37
GACGTCA	140	38.56667	22
CTCGGGG	170	38.377617	13
GGCGGTC	200	38.245277	35
AATTCGG	200	38.245277	20
AAGCCGA	145	37.236782	14
TAAGCCG	145	37.236782	13
TCGGGGA	200	37.12042	14
ATTCGGT	200	37.12042	21
AGCCGAT	150	35.995556	15
CCGATGA	150	35.995556	17
GCCGATG	150	35.995556	16
CGATGAC	150	35.995556	18
GAATTCG	215	35.577007	19