ERR1378124.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	ERR1378124.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	774867
Sequences flagged as poor quality	0
Sequence length	51
%GC	40

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA	1685	0.217456673209725	No Hit
AAGAGCGGTTCAGCAGGAATGCCGAGACCGATTCCTATCTCGTATGCCGTC	1442	0.18609645268155695	Illumina Paired End PCR Primer 2 (96% over 32bp)
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATTCCTATCTCGTATGCC	1333	0.17202952248579434	Illumina Paired End PCR Primer 2 (97% over 35bp)
TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA	1213	0.15654299382990888	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TGCCGTC	230	42.08248	45
CGTCATA	220	40.902107	24
ATGCCGT	240	40.30562	44
TATGCCG	235	40.205906	43
AGCCGAT	230	40.101852	15
ACGTCAT	230	40.101852	23
ATGACGT	225	39.99318	20
GCGGTCT	160	39.368282	36
TGACGTC	235	38.29134	21
GCCGATG	235	38.29134	16
GATGACG	235	38.29134	19
TCGGGGA	165	38.1753	14
AATTCGG	165	38.1753	20
GACGTCA	245	37.646637	22
CGATGAC	240	37.4936	18
CGGTATT	175	37.27935	24
TTCGGTA	170	37.052498	22
GAATTCG	170	37.052498	19
TCGGTAT	170	37.052498	23
CGGGGAA	180	36.243816	15