Basic Statistics
Measure | Value |
---|---|
Filename | ERR1378118.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 804896 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAGAGCGGTTCAGCAGGAATGCCGAGACCGTCGGCAATCTCGTATGCCGTC | 1879 | 0.23344630859142051 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 1454 | 0.18064445592971018 | No Hit |
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTCGGCAATCTCGTATGCC | 1173 | 0.14573311334632053 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 1108 | 0.13765753588041188 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGTCATA | 140 | 0.0 | 40.174244 | 24 |
TATGCCG | 195 | 0.0 | 39.226543 | 43 |
ATGACGT | 150 | 0.0 | 37.495964 | 20 |
ATGCCGT | 205 | 0.0 | 37.313057 | 44 |
GACGTCA | 145 | 0.0 | 37.23737 | 22 |
TGACGTC | 145 | 0.0 | 37.23737 | 21 |
GATGACG | 145 | 0.0 | 37.23737 | 19 |
TGCCGTC | 210 | 0.0 | 36.435966 | 45 |
ACGCCAA | 25 | 0.0021078477 | 35.996124 | 29 |
AAGCCGA | 155 | 0.0 | 34.83496 | 14 |
AATTCGG | 150 | 0.0 | 34.496284 | 20 |
TTCGGTA | 150 | 0.0 | 34.496284 | 22 |
CCGATGA | 170 | 0.0 | 34.40806 | 17 |
TAAGCCG | 160 | 0.0 | 33.746365 | 13 |
GAATTCG | 155 | 0.0 | 33.383503 | 19 |
GCCGATG | 165 | 0.0 | 32.723747 | 16 |
CGATGAC | 165 | 0.0 | 32.723747 | 18 |
GGCGGTC | 160 | 0.0 | 32.340267 | 35 |
ACGTCAT | 175 | 0.0 | 32.139397 | 23 |
AGCCGAT | 170 | 0.0 | 31.761286 | 15 |