FastQCFastQC Report
Mon 6 Jun 2016
ERR1378118.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378118.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences804896
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGAGCGGTTCAGCAGGAATGCCGAGACCGTCGGCAATCTCGTATGCCGTC18790.23344630859142051Illumina Paired End PCR Primer 2 (96% over 30bp)
TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA14540.18064445592971018No Hit
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTCGGCAATCTCGTATGCC11730.14573311334632053Illumina Paired End PCR Primer 2 (96% over 33bp)
TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA11080.13765753588041188No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTCATA1400.040.17424424
TATGCCG1950.039.22654343
ATGACGT1500.037.49596420
ATGCCGT2050.037.31305744
GACGTCA1450.037.2373722
TGACGTC1450.037.2373721
GATGACG1450.037.2373719
TGCCGTC2100.036.43596645
ACGCCAA250.002107847735.99612429
AAGCCGA1550.034.8349614
AATTCGG1500.034.49628420
TTCGGTA1500.034.49628422
CCGATGA1700.034.4080617
TAAGCCG1600.033.74636513
GAATTCG1550.033.38350319
GCCGATG1650.032.72374716
CGATGAC1650.032.72374718
GGCGGTC1600.032.34026735
ACGTCAT1750.032.13939723
AGCCGAT1700.031.76128615