Basic Statistics
Measure | Value |
---|---|
Filename | ERR1378113.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 744529 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAGAGCGGTTCAGCAGGAATGCCGAGACCGATGAGCATCTCGTATGCCGTC | 1657 | 0.22255681108459174 | Illumina Paired End PCR Primer 2 (96% over 32bp) |
TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 1478 | 0.19851476571093937 | No Hit |
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATGAGCATCTCGTATGCC | 1094 | 0.14693853429483605 | Illumina Paired End PCR Primer 2 (97% over 35bp) |
TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 1032 | 0.1386111219307777 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGCGGTC | 145 | 0.0 | 43.442116 | 35 |
GCCGATG | 180 | 0.0 | 39.994328 | 16 |
TCGGGGA | 165 | 0.0 | 39.53985 | 14 |
CGTCATA | 185 | 0.0 | 38.913403 | 24 |
CGATGAC | 180 | 0.0 | 38.744507 | 18 |
TGCCGTC | 215 | 0.0 | 38.73365 | 45 |
CGGTATT | 170 | 0.0 | 38.37691 | 24 |
AGCCGAT | 185 | 0.0 | 37.697357 | 15 |
TCGGTAT | 175 | 0.0 | 37.28043 | 23 |
AGGCGGT | 170 | 0.0 | 37.05357 | 34 |
GATGACG | 195 | 0.0 | 35.76416 | 19 |
TAAGCCG | 195 | 0.0 | 35.76416 | 13 |
TTCGGTA | 180 | 0.0 | 34.995037 | 22 |
GACGTCA | 200 | 0.0 | 34.870056 | 22 |
TGACGTC | 200 | 0.0 | 34.870056 | 21 |
ACGTCAT | 200 | 0.0 | 34.870056 | 23 |
ATGCCGT | 240 | 0.0 | 34.682583 | 44 |
GCGGTCT | 185 | 0.0 | 34.049225 | 36 |
TATGCCG | 245 | 0.0 | 33.974773 | 43 |
AATTCGG | 190 | 0.0 | 33.153194 | 20 |