FastQCFastQC Report
Mon 6 Jun 2016
ERR1378113.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378113.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences744529
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGAGCGGTTCAGCAGGAATGCCGAGACCGATGAGCATCTCGTATGCCGTC16570.22255681108459174Illumina Paired End PCR Primer 2 (96% over 32bp)
TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA14780.19851476571093937No Hit
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATGAGCATCTCGTATGCC10940.14693853429483605Illumina Paired End PCR Primer 2 (97% over 35bp)
TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA10320.1386111219307777No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGCGGTC1450.043.44211635
GCCGATG1800.039.99432816
TCGGGGA1650.039.5398514
CGTCATA1850.038.91340324
CGATGAC1800.038.74450718
TGCCGTC2150.038.7336545
CGGTATT1700.038.3769124
AGCCGAT1850.037.69735715
TCGGTAT1750.037.2804323
AGGCGGT1700.037.0535734
GATGACG1950.035.7641619
TAAGCCG1950.035.7641613
TTCGGTA1800.034.99503722
GACGTCA2000.034.87005622
TGACGTC2000.034.87005621
ACGTCAT2000.034.87005623
ATGCCGT2400.034.68258344
GCGGTCT1850.034.04922536
TATGCCG2450.033.97477343
AATTCGG1900.033.15319420