FastQCFastQC Report
Mon 6 Jun 2016
ERR1378111.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378111.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences827060
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA20040.24230406500133No Hit
AAGAGCGGTTCAGCAGGAATGCCGAGACCGAAATGCATCTCGTATGCCGTC18610.22501390467438878Illumina Paired End PCR Primer 2 (96% over 31bp)
TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA14020.16951611733126978No Hit
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAAATGCATCTCGTATGCC10960.13251759243585712Illumina Paired End PCR Primer 2 (97% over 34bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTCATA2250.041.99785624
TAAGCCG2250.041.9953213
TTCGGTA1600.040.77916722
TCGGTAT1600.040.77916723
TGCCGTC2050.040.62487445
ACGTCAT2350.040.21071623
CGGTATT1650.039.54343424
TGACGTC2400.039.37298621
AGCCGAT2400.039.37060515
CGGGGAA1800.038.74567815
GACGTCA2450.038.56945822
GCGGTCT1700.038.3780736
GGCGGTC1700.038.3780735
GATGACG2500.037.79807319
CGATGAC2500.037.79807318
ATGACGT2550.037.05693420
TATGCCG2250.036.99587643
AATTCGG1800.036.2481520
GAATTCG1800.036.2481519
ATCGTAG250.00210792135.99598739