Basic Statistics
Measure | Value |
---|---|
Filename | ERR1378111.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 827060 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 2004 | 0.24230406500133 | No Hit |
AAGAGCGGTTCAGCAGGAATGCCGAGACCGAAATGCATCTCGTATGCCGTC | 1861 | 0.22501390467438878 | Illumina Paired End PCR Primer 2 (96% over 31bp) |
TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 1402 | 0.16951611733126978 | No Hit |
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAAATGCATCTCGTATGCC | 1096 | 0.13251759243585712 | Illumina Paired End PCR Primer 2 (97% over 34bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGTCATA | 225 | 0.0 | 41.997856 | 24 |
TAAGCCG | 225 | 0.0 | 41.99532 | 13 |
TTCGGTA | 160 | 0.0 | 40.779167 | 22 |
TCGGTAT | 160 | 0.0 | 40.779167 | 23 |
TGCCGTC | 205 | 0.0 | 40.624874 | 45 |
ACGTCAT | 235 | 0.0 | 40.210716 | 23 |
CGGTATT | 165 | 0.0 | 39.543434 | 24 |
TGACGTC | 240 | 0.0 | 39.372986 | 21 |
AGCCGAT | 240 | 0.0 | 39.370605 | 15 |
CGGGGAA | 180 | 0.0 | 38.745678 | 15 |
GACGTCA | 245 | 0.0 | 38.569458 | 22 |
GCGGTCT | 170 | 0.0 | 38.37807 | 36 |
GGCGGTC | 170 | 0.0 | 38.37807 | 35 |
GATGACG | 250 | 0.0 | 37.798073 | 19 |
CGATGAC | 250 | 0.0 | 37.798073 | 18 |
ATGACGT | 255 | 0.0 | 37.056934 | 20 |
TATGCCG | 225 | 0.0 | 36.995876 | 43 |
AATTCGG | 180 | 0.0 | 36.24815 | 20 |
GAATTCG | 180 | 0.0 | 36.24815 | 19 |
ATCGTAG | 25 | 0.002107921 | 35.995987 | 39 |