ERR1378109.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	ERR1378109.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	660374
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAGAGCGGTTCAGCAGGAATGCCGAGACCGGCTCCAATCTCGTATGCCGTC	2669	0.404164912610127	Illumina Paired End PCR Primer 2 (96% over 30bp)
TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA	1544	0.2338069033608228	No Hit
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGCTCCAATCTCGTATGCC	1428	0.2162410997404501	Illumina Paired End PCR Primer 2 (96% over 33bp)
TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA	930	0.14082928764609146	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GGCGGTC	140	43.38906	35
CTCGGGG	130	43.26217	13
ATGACGT	145	41.892883	20
CGTCATA	145	41.892883	24
TGACGTC	150	40.496456	21
AGGCGGT	150	40.496456	34
CGATGAC	145	40.341297	18
TGCCGTC	315	40.01165	45
GACGTCA	155	39.19012	22
TTCGGTA	155	39.19012	22
CCGATGA	150	38.99659	17
GCCGATG	150	38.99659	16
AGCCGAT	150	38.993637	15
TAAGCCG	150	38.993637	13
ACGTCAT	160	37.965427	23
GATGACG	155	37.738632	19
ATGCCGT	340	37.052776	44
GCGGTCT	165	36.81496	36
CGGTATT	165	36.81496	24
TATGCCG	345	36.515778	43