Basic Statistics
Measure | Value |
---|---|
Filename | ERR1378108.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 587200 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAGAGCGGTTCAGCAGGAATGCCGAGACCGCCTTAGATCTCGTATGCCGTC | 2272 | 0.3869209809264305 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 1659 | 0.28252724795640327 | No Hit |
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCCTTAGATCTCGTATGCC | 1461 | 0.24880790190735694 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 1033 | 0.17591961852861035 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TCGGTAT | 90 | 0.0 | 44.996166 | 23 |
CGTCATA | 175 | 0.0 | 43.710564 | 24 |
TGCCGTC | 255 | 0.0 | 42.374596 | 45 |
GACGTCA | 185 | 0.0 | 41.34431 | 22 |
TGACGTC | 185 | 0.0 | 41.34431 | 21 |
CGATGAC | 185 | 0.0 | 41.34431 | 18 |
TATGCCG | 265 | 0.0 | 40.747776 | 43 |
ATGCCGT | 265 | 0.0 | 40.747776 | 44 |
AAGCCGA | 195 | 0.0 | 40.377735 | 14 |
CCGATGA | 190 | 0.0 | 40.2563 | 17 |
CCTCGGG | 95 | 0.0 | 40.2563 | 12 |
ATGACGT | 190 | 0.0 | 40.2563 | 20 |
GATGACG | 190 | 0.0 | 40.2563 | 19 |
TAAGCCG | 190 | 0.0 | 40.2563 | 13 |
TTCGGTA | 105 | 0.0 | 38.56486 | 22 |
GGCGGTC | 100 | 0.0 | 38.246742 | 35 |
AGCCGAT | 200 | 0.0 | 38.243484 | 15 |
GCCGATG | 205 | 0.0 | 37.31072 | 16 |
TTCCTCG | 110 | 0.0 | 36.833866 | 10 |
CGGTATT | 110 | 0.0 | 36.815044 | 24 |