ERR1378108.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	ERR1378108.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	587200
Sequences flagged as poor quality	0
Sequence length	51
%GC	40

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAGAGCGGTTCAGCAGGAATGCCGAGACCGCCTTAGATCTCGTATGCCGTC	2272	0.3869209809264305	Illumina Paired End PCR Primer 2 (96% over 30bp)
TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA	1659	0.28252724795640327	No Hit
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCCTTAGATCTCGTATGCC	1461	0.24880790190735694	Illumina Paired End PCR Primer 2 (96% over 33bp)
TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA	1033	0.17591961852861035	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TCGGTAT	90	44.996166	23
CGTCATA	175	43.710564	24
TGCCGTC	255	42.374596	45
GACGTCA	185	41.34431	22
TGACGTC	185	41.34431	21
CGATGAC	185	41.34431	18
TATGCCG	265	40.747776	43
ATGCCGT	265	40.747776	44
AAGCCGA	195	40.377735	14
CCGATGA	190	40.2563	17
CCTCGGG	95	40.2563	12
ATGACGT	190	40.2563	20
GATGACG	190	40.2563	19
TAAGCCG	190	40.2563	13
TTCGGTA	105	38.56486	22
GGCGGTC	100	38.246742	35
AGCCGAT	200	38.243484	15
GCCGATG	205	37.31072	16
TTCCTCG	110	36.833866	10
CGGTATT	110	36.815044	24