FastQCFastQC Report
Mon 6 Jun 2016
ERR1378108.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378108.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences587200
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGAGCGGTTCAGCAGGAATGCCGAGACCGCCTTAGATCTCGTATGCCGTC22720.3869209809264305Illumina Paired End PCR Primer 2 (96% over 30bp)
TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA16590.28252724795640327No Hit
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCCTTAGATCTCGTATGCC14610.24880790190735694Illumina Paired End PCR Primer 2 (96% over 33bp)
TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA10330.17591961852861035No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGGTAT900.044.99616623
CGTCATA1750.043.71056424
TGCCGTC2550.042.37459645
GACGTCA1850.041.3443122
TGACGTC1850.041.3443121
CGATGAC1850.041.3443118
TATGCCG2650.040.74777643
ATGCCGT2650.040.74777644
AAGCCGA1950.040.37773514
CCGATGA1900.040.256317
CCTCGGG950.040.256312
ATGACGT1900.040.256320
GATGACG1900.040.256319
TAAGCCG1900.040.256313
TTCGGTA1050.038.5648622
GGCGGTC1000.038.24674235
AGCCGAT2000.038.24348415
GCCGATG2050.037.3107216
TTCCTCG1100.036.83386610
CGGTATT1100.036.81504424