FastQCFastQC Report
Mon 6 Jun 2016
ERR1378105.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378105.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences902756
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA23270.2577662181143078No Hit
AAGAGCGGTTCAGCAGGAATGCCGAGACCGAGAAGAATCTCGTATGCCGTC14670.16250238159591296Illumina Paired End PCR Primer 2 (96% over 31bp)
TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA14210.15740687406120812No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG1200.041.24456843
AGCCGAT2350.040.20969415
TCGGTAT2150.038.71797623
GCCGATG2450.038.56848516
ACGTCAT2450.038.56848523
CGTCATA2450.038.56848524
TAAGCCG2450.038.5663513
GGCGGTC2200.037.8380235
GCGGTCT2300.037.17107836
CGATGAC2550.037.05618
CGGTATT2250.036.99717724
TCGGGGA2250.036.9951314
ATTCGGT2350.036.380221
ATGACGT2600.036.3433820
GATGACG2600.036.3433819
AAGCCGA2600.036.3413714
GACGTCA2650.035.65765822
TGACGTC2650.035.65765821
CTCGGGG1900.035.52163713
AGGCGGT2350.035.4228334