Basic Statistics
Measure | Value |
---|---|
Filename | ERR1378105.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 902756 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 2327 | 0.2577662181143078 | No Hit |
AAGAGCGGTTCAGCAGGAATGCCGAGACCGAGAAGAATCTCGTATGCCGTC | 1467 | 0.16250238159591296 | Illumina Paired End PCR Primer 2 (96% over 31bp) |
TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 1421 | 0.15740687406120812 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATGCCG | 120 | 0.0 | 41.244568 | 43 |
AGCCGAT | 235 | 0.0 | 40.209694 | 15 |
TCGGTAT | 215 | 0.0 | 38.717976 | 23 |
GCCGATG | 245 | 0.0 | 38.568485 | 16 |
ACGTCAT | 245 | 0.0 | 38.568485 | 23 |
CGTCATA | 245 | 0.0 | 38.568485 | 24 |
TAAGCCG | 245 | 0.0 | 38.56635 | 13 |
GGCGGTC | 220 | 0.0 | 37.83802 | 35 |
GCGGTCT | 230 | 0.0 | 37.171078 | 36 |
CGATGAC | 255 | 0.0 | 37.056 | 18 |
CGGTATT | 225 | 0.0 | 36.997177 | 24 |
TCGGGGA | 225 | 0.0 | 36.99513 | 14 |
ATTCGGT | 235 | 0.0 | 36.3802 | 21 |
ATGACGT | 260 | 0.0 | 36.34338 | 20 |
GATGACG | 260 | 0.0 | 36.34338 | 19 |
AAGCCGA | 260 | 0.0 | 36.34137 | 14 |
GACGTCA | 265 | 0.0 | 35.657658 | 22 |
TGACGTC | 265 | 0.0 | 35.657658 | 21 |
CTCGGGG | 190 | 0.0 | 35.521637 | 13 |
AGGCGGT | 235 | 0.0 | 35.42283 | 34 |