ERR1378102.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	ERR1378102.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	622275
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAGAGCGGTTCAGCAGGAATGCCGAGACCGTCCCGAATCTCGTATGCCGTC	2002	0.3217227110200474	Illumina Paired End PCR Primer 2 (96% over 30bp)
TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA	1605	0.25792455104254547	No Hit
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTCCCGAATCTCGTATGCC	1139	0.18303804588003697	Illumina Paired End PCR Primer 2 (96% over 33bp)
TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA	1114	0.17902052950865777	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TCCTCGG	155	40.650898	11
TTCCTCG	155	40.650898	10
GGCGGTC	190	40.259132	35
TTCGGTA	190	40.259132	22
TCGGTAT	190	40.259132	23
AATTCGG	195	39.226845	20
CGGTATT	195	39.226845	24
GCGGTCT	200	38.246174	36
GAATTCG	200	38.246174	19
TATGCCG	230	38.148357	43
ATTCGGT	205	37.31334	21
TAAGCCG	170	37.055115	13
ATGCCGT	240	36.558846	44
AGGCGGT	210	36.424927	34
CGGTCTC	210	36.424927	37
AGCCGAT	175	35.9964	15
CCGATGA	175	35.9964	17
GCCGATG	175	35.9964	16
CTCGGGG	175	35.9964	13
TCGGGGA	220	35.791874	14