ERR1378100.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	ERR1378100.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	669847
Sequences flagged as poor quality	0
Sequence length	51
%GC	40

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAGAGCGGTTCAGCAGGAATGCCGAGACCGGAAACCATCTCGTATGCCGTC	2871	0.42860533823395497	Illumina Paired End PCR Primer 2 (96% over 30bp)
TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA	1762	0.26304514314462857	No Hit
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGAAACCATCTCGTATGCC	1481	0.2210952650381356	Illumina Paired End PCR Primer 2 (96% over 33bp)
TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA	1107	0.16526161944444032	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGATGAC	155	43.542248	18
TAAGCCG	155	43.542248	13
GACGTCA	160	42.181553	22
GCCGATG	160	42.181553	16
TGCCGTC	355	41.84383	45
ACGTCAT	175	39.851524	23
AGCCGAT	170	39.700283	15
TGACGTC	170	39.700283	21
ATGCCGT	375	39.594418	44
TATGCCG	380	39.07344	43
GATGACG	180	38.744537	19
AAGCCGA	175	38.56599	14
TTCGGTA	170	38.37694	22
CGTCATA	185	37.697384	24
CCGATGA	180	37.494713	17
ATGACGT	180	37.494713	20
GCGGTCT	175	37.280457	36
TCGGTAT	175	37.280457	23
AATTCGG	180	36.24489	20
CGGTATT	180	36.24489	24