FastQCFastQC Report
Mon 6 Jun 2016
ERR1378096.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378096.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1837237
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG2300.034.2353443
TCGGTAT2000.033.74626523
AGCCGAT1900.031.97014615
CGTCATA1900.031.97014624
GAATTCG2200.031.70103619
AATTCGG2150.031.39187220
TAAGCCG1950.031.15039813
TTCGGTA2200.030.67842322
GCCGATG2150.030.34547816
CGGTATT2250.029.99667724
GGCGGTC2300.029.34457835
ACGTCAT2250.028.99678823
ATGCCGT2700.028.330244
GCGGTCT2500.027.89691436
TCGGGGA2500.027.89691414
ATTCGGT2500.026.99701321
TGACGTC2450.026.62970521
GATGACG2500.026.09711319
TGCCGTC3100.025.41286545
CGGTCTC2750.025.36082837
Produced by FastQC (version 0.11.5)