ERR1378095.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	ERR1378095.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	961060
Sequences flagged as poor quality	0
Sequence length	51
%GC	40

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAGAGCGGTTCAGCAGGAATGCCGAGACCGAAACATATCTCGTATGCCGTC	1970	0.20498199904272368	Illumina Paired End PCR Primer 2 (96% over 31bp)
TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA	1816	0.18895802551349553	No Hit
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAAACATATCTCGTATGCC	1698	0.17667991592616486	Illumina Paired End PCR Primer 2 (97% over 34bp)
TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA	1188	0.12361351008261712	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TGCCGTC	230	42.078842	45
ATTCGGT	185	40.131424	21
GACGTCA	225	39.9963	22
AGCCGAT	225	39.99422	15
GCCGATG	225	39.99422	16
TAAGCCG	225	39.99422	13
TGACGTC	230	39.126816	21
TTCGGTA	190	39.075333	22
GCGGTCT	185	38.917343	36
ACGTCAT	235	38.29433	23
CGGTATT	195	38.073402	24
TCGGTAT	195	38.073402	23
TATGCCG	255	37.935696	43
CGTCATA	240	37.496532	24
GGCGGTC	195	36.92158	35
CGGTCTC	195	36.92158	37
ATGCCGT	265	36.504158	44
AAGCCGA	250	35.994797	14
ATGACGT	250	35.994797	20
AATTCGG	210	35.352036	20