Basic Statistics
Measure | Value |
---|---|
Filename | ERR1390794.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 699186 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGTATGC | 55 | 4.1717667E-6 | 28.627628 | 44 |
GATCGGA | 135 | 0.0 | 26.65853 | 18 |
AGATCGG | 145 | 0.0 | 24.82001 | 17 |
CTCGTAT | 65 | 1.5262447E-5 | 24.223377 | 42 |
TCTCGTA | 65 | 1.5262447E-5 | 24.223377 | 41 |
ATCGGAA | 140 | 0.0 | 24.099787 | 19 |
TCGTATG | 70 | 2.7074118E-5 | 22.493134 | 43 |
CGTTTGC | 50 | 0.0022677477 | 22.493134 | 23 |
TCGGAAG | 155 | 1.8189894E-12 | 21.767548 | 20 |
CCGTTAA | 75 | 4.6101497E-5 | 20.993591 | 31 |
CGTTAAG | 65 | 4.2446755E-4 | 20.762894 | 32 |
CCTTCGT | 90 | 8.103341E-6 | 20.039759 | 1 |
AGACCGT | 85 | 1.206404E-4 | 18.523758 | 28 |
GCGGTTC | 195 | 1.8189894E-12 | 18.455904 | 28 |
CGGTTCA | 195 | 1.8189894E-12 | 18.455904 | 29 |
AGCGGTT | 200 | 1.8189894E-12 | 17.994507 | 27 |
ACGGGAT | 90 | 1.8687136E-4 | 17.494661 | 13 |
ACGGAAG | 105 | 3.117758E-5 | 17.137627 | 24 |
GACCGTT | 80 | 0.0017134354 | 16.869852 | 29 |
ACCGTTA | 80 | 0.0017134354 | 16.869852 | 30 |