FastQCFastQC Report
Mon 6 Jun 2016
ERR1390794.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1390794.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences699186
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTATGC554.1717667E-628.62762844
GATCGGA1350.026.6585318
AGATCGG1450.024.8200117
CTCGTAT651.5262447E-524.22337742
TCTCGTA651.5262447E-524.22337741
ATCGGAA1400.024.09978719
TCGTATG702.7074118E-522.49313443
CGTTTGC500.002267747722.49313423
TCGGAAG1551.8189894E-1221.76754820
CCGTTAA754.6101497E-520.99359131
CGTTAAG654.2446755E-420.76289432
CCTTCGT908.103341E-620.0397591
AGACCGT851.206404E-418.52375828
GCGGTTC1951.8189894E-1218.45590428
CGGTTCA1951.8189894E-1218.45590429
AGCGGTT2001.8189894E-1217.99450727
ACGGGAT901.8687136E-417.49466113
ACGGAAG1053.117758E-517.13762724
GACCGTT800.001713435416.86985229
ACCGTTA800.001713435416.86985230