FastQCFastQC Report
Mon 6 Jun 2016
ERR1390793.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1390793.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences433915
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACGAAGT300.005150277629.99224340
CCGAGAC1058.367351E-1125.70763445
AGATCGG1001.3442332E-924.74359917
GATCGGA1001.3442332E-924.74359918
ATCGGAA1052.3628672E-923.56533219
TCGGAAG1104.0472514E-922.4941820
TGAGCCG903.2853677E-722.4941845
GAGATCG1351.9608706E-919.9948316
CCGAGAT1251.7649654E-819.79487814
CCTTCGT706.9051504E-419.314111
CTTCGTT706.9051504E-419.314112
CGAGATC1354.2666215E-818.32859215
AGCGGTT1459.655014E-817.0645527
TTCGTTG800.001691784716.8998473
GCGGTTC1501.4209036E-716.49573128
AGAGCGG1501.4209036E-716.49573125
CGGAAGA1552.063407E-715.96361221
CGGTTCA1552.063407E-715.96361229
GAGCGGT1552.063407E-715.96361226
GGAAACG1004.1604787E-415.7495579