Basic Statistics
Measure | Value |
---|---|
Filename | ERR1390793.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 433915 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
ACGAAGT | 30 | 0.0051502776 | 29.992243 | 40 |
CCGAGAC | 105 | 8.367351E-11 | 25.707634 | 45 |
AGATCGG | 100 | 1.3442332E-9 | 24.743599 | 17 |
GATCGGA | 100 | 1.3442332E-9 | 24.743599 | 18 |
ATCGGAA | 105 | 2.3628672E-9 | 23.565332 | 19 |
TCGGAAG | 110 | 4.0472514E-9 | 22.49418 | 20 |
TGAGCCG | 90 | 3.2853677E-7 | 22.49418 | 45 |
GAGATCG | 135 | 1.9608706E-9 | 19.99483 | 16 |
CCGAGAT | 125 | 1.7649654E-8 | 19.794878 | 14 |
CCTTCGT | 70 | 6.9051504E-4 | 19.31411 | 1 |
CTTCGTT | 70 | 6.9051504E-4 | 19.31411 | 2 |
CGAGATC | 135 | 4.2666215E-8 | 18.328592 | 15 |
AGCGGTT | 145 | 9.655014E-8 | 17.06455 | 27 |
TTCGTTG | 80 | 0.0016917847 | 16.899847 | 3 |
GCGGTTC | 150 | 1.4209036E-7 | 16.495731 | 28 |
AGAGCGG | 150 | 1.4209036E-7 | 16.495731 | 25 |
CGGAAGA | 155 | 2.063407E-7 | 15.963612 | 21 |
CGGTTCA | 155 | 2.063407E-7 | 15.963612 | 29 |
GAGCGGT | 155 | 2.063407E-7 | 15.963612 | 26 |
GGAAACG | 100 | 4.1604787E-4 | 15.749557 | 9 |