FastQCFastQC Report
Mon 6 Jun 2016
ERR1390792.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1390792.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences922909
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCCGTAG250.002110994435.98573720
CGATAAC501.9863528E-631.4892332
ACCGATA602.4253677E-729.98974230
GACCGAT554.1748663E-628.62657229
TCTCGTA654.888534E-727.68133741
CTCGTAT608.214491E-626.23960342
CGTATGC801.05736035E-725.30247544
AGATCGG1003.6514393E-822.49474317
GATCGGA1104.0618033E-922.49474318
CCGATAA702.7093947E-522.49230831
AGACCGA702.7093947E-522.49230828
TCGTATG855.0477265E-621.16808143
ACCGAAA550.003941287820.44976839
ATCTCGT807.5745236E-519.682940
TCGGAAG1151.6011654E-719.55746820
GAGACCG851.2072755E-418.52307527
CCGAGAC1358.6134787E-716.66006745
ATCGGAA1401.2570999E-616.06767519
GCGGTTC1656.9303023E-613.63170128
AGCGGTT1656.9303023E-613.63170127
Produced by FastQC (version 0.11.5)