FastQCFastQC Report
Mon 6 Jun 2016
ERR1390789.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1390789.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences555092
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GACCGAT250.00210869835.9912129
AGATCGG855.456968E-1231.7598117
GCGACAG300.0051511429.99267430
ACCGATT300.0051511429.99267430
TCGTATG300.0051511429.99267443
ACTCCGG300.0051511429.99267440
CCCGGCA300.0051511429.99267434
GATCGGA952.3646862E-1128.41667218
ATCGGAA952.3646862E-1128.41667219
TCGGAAG952.3646862E-1128.41411220
TTCGTTG755.5533746E-827.0372453
GAGCGGT1105.456968E-1226.58441526
CGGAAGA1058.54925E-1125.70800621
TCGTTGG801.037788E-725.347424
CCGAGAT1350.024.99614514
CCGAGAC1101.5097612E-1024.53946145
AGAGCGG1101.5097612E-1024.53946125
CGTTGGA851.8633364E-723.8585475
GCGGTTC1152.6557245E-1023.47252828
AGCGGTT1204.5110937E-1022.49450527
Produced by FastQC (version 0.11.5)