FastQCFastQC Report
Mon 6 Jun 2016
ERR1390788.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1390788.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences407816
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACCGCGC300.00514752429.9950949
CGCCACC651.4995552E-524.2744335
CCGGGCG602.433874E-422.5405451
TGGTGCG500.002265888322.49356330
CGTTGGA600.00643619718.7837875
CCACCGC750.001109771217.9970577
GCCACCG901.8364847E-417.5315366
CATGCCC1053.1088275E-517.14005511
GCTAGAC1104.637074E-516.35895519
ACTAGAC1703.3987817E-815.87780919
CTAGACA3050.014.74987820
CCGAGAT950.005378347414.20646114
ACCATGC1758.146344E-714.1405449
CAAGGCA1301.9260036E-413.84219416
GCTAGGA1000.0075543313.49613834
CCACCAT2502.8982322E-711.6980887
GCCACCA3306.020855E-1011.6117966
CCATGCC2201.0565824E-511.2481610
GGAATAA1450.00682631610.85896129
CCCTTCT1450.00682631610.85896144
Produced by FastQC (version 0.11.5)