FastQCFastQC Report
Mon 6 Jun 2016
ERR1390782.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1390782.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences886150
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GACGCAC207.0392777E-444.99108529
ACCGCGC300.00514593630.0008269
CACCGCG450.001226135825.0006898
ATCGGAA551.3696979E-424.54059219
TCGGAAG651.5255782E-524.2259720
CGTATGC500.002266811422.49554344
GACCGGT500.002266811422.49554329
GATCGGA706.9910544E-419.28189518
ACCGGTG600.00651679718.74628430
AGATCGG750.001111427317.99643317
CCGGTGA750.001111427317.99643331
ACCCCGT901.84784E-417.5212486
GCCACCG1802.0372681E-1017.5212486
ATCTTCG1055.979603E-415.0182125
ACGGGAT1251.3822132E-414.39714813
CGGTTCA1108.583814E-414.3185779
CCGAGAC1108.598493E-414.31534625
GAGCGGT950.005331632714.227786
AGAGCGG950.005331632714.227785
AACCCCG1000.007488865413.5163925
Produced by FastQC (version 0.11.5)