FastQCFastQC Report
Mon 6 Jun 2016
ERR1390781.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1390781.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences954588
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TAAGTCG300.005152689329.99301736
CGCCCGG755.649781E-826.99371513
ACGCCCG802.9798957E-622.49476212
CGCAAAA500.002267395822.49476239
CTCGTAT754.6098437E-520.99511142
CCGGCTA1109.998621E-820.45085516
CGGCTAA1151.597673E-719.56168717
ACACCCG706.9932296E-419.28122512
CGCTCAC600.006516491518.74661816
TTCGGAG600.006516491518.74661819
TCTCGTA851.2063205E-418.52509941
GATCGGA1102.2590575E-618.4057718
CACGCCC1802.0736479E-1017.49959211
GACCGAG952.8226088E-416.57595629
AGACCGA952.8226088E-416.57595628
CGTATGC952.823737E-416.57508744
TCGGAAG1257.636521E-616.19707720
ACCACGC2251.8189894E-1115.9996289
CTTCGTA1004.1668536E-415.7496347
CCGAGCT1004.171839E-415.74715831
Produced by FastQC (version 0.11.5)