FastQCFastQC Report
Mon 6 Jun 2016
ERR1390778.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1390778.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1097176
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TGTACGC250.002108229635.99595319
TATCTCG801.0004442E-1030.92838139
CGATAGT406.176604E-428.1167126
TCGTATG856.504706E-926.46158243
CGAGACG901.19343895E-824.99491132
CTCGTAT1001.3496901E-924.7415842
GAGACGT952.1198503E-823.6793933
CGTATGC952.1229425E-823.67615144
CGGTGTT500.00224569222.5323933
ATCTCGT1056.126356E-821.42225640
GACGTAT1056.126356E-821.42225635
AGACGTA1101.0014264E-720.44851734
GCGATAG550.003943151320.44851725
ACGTATC1101.0014264E-720.44851736
TCTCGTA1101.00189936E-720.44758641
GAGACCG1302.7768692E-819.03545227
CCCGGCA600.00651453918.7478915
GACCGAG1202.501747E-718.74618129
CTTGCGA600.006521399618.74447322
AGACCGA1253.8391954E-717.99715428
Produced by FastQC (version 0.11.5)