FastQCFastQC Report
Mon 6 Jun 2016
ERR1390776.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1390776.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences829699
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACCGTGC300.00515214229.993219
AGGCGCC500.00226706322.49490710
CCTTCGT1056.001392E-821.4625281
GCGTTTC550.00394079220.4499158
TCTCGTA550.00394216820.44868341
CGTATGC550.003943544320.4474544
AGATCGG706.9890346E-419.2825117
GATCGGA706.9890346E-419.2825118
TCAGCCG600.00652205418.74349845
CCGCCAC1102.22185E-618.4371514
ATCGGAA901.8672575E-417.49709319
CACGCCC1305.791517E-717.30377411
CGCCACC1701.7880666E-917.2341885
CCGCGCC800.001712895716.8711810
CCCGCCA1358.4345083E-716.6930793
CTTCGTT1401.2331202E-616.0968972
CGCCCGG850.002567201915.87971413
ACCACGC1754.87089E-815.4250799
TCGTTGG1502.5310146E-615.0228624
ACCGCGC900.003758404214.9966049
Produced by FastQC (version 0.11.5)